Homework 4-3

How many nucleotide and protein sequence of Lycopersicon esculentum were know? Please find its class II small heat shock protein mRNA, complete cds.

Query Result

Search : Lycopersicon esculentum [organism] --> Retrieve 679 Documents


The mRNA


                          81  a atgtccaaaa atttctcaat actgaaaatg gatttgaggt
      121 tgttgggtat cgataacaca ccactcttcc acactctcca ccatatgatg gaagctgccg
      181 gtgaagattc cgacaagtct gtcaatgcac catcaaggaa ctatgttcgt gatgctaagg
      241 ccatggctgc tacaccagcg gatgtgaagg agtatcctaa ttcgtatgtt tttgttgtgg
      301 atatgccagg gttgaaatct ggagatatca aagtgcaggt ggaagaagac aatgtgctgt
      361 tgattagtgg tgaaaggaag aggggagaag agaaagaagg tgcaaagttt attaggatgg
      421 agagaagggt tgggaaattc atgaggaagt ttagtctgcc agagaatgcg aatactgatg
      481 caatttctgc agtttgtcaa gatggagttc tgactgttac tgttcagaaa ttgcctcctc
      541 ctgagccaaa gaaacccaaa acaattgagg tgaaagttgc ttga  584


The cds


LOCUS       LEU72396      738 bp    mRNA            PLN       23-OCT-1996
DEFINITION  Lycopersicon esculentum class II small heat shock protein
            Le-HSP18.6 mRNA, complete cds.
ACCESSION   U72396
NID         g1622944
KEYWORDS    .
SOURCE      tomato.
  ORGANISM  Lycopersicon esculentum
            Eukaryotae; mitochondrial eukaryotes; Viridiplantae;
            Charophyta/Embryophyta group; Embryophyta; Magnoliophyta;
            Magnoliopsida; Solananae; Solanales; Solanaceae; Solanum clade;
            Lycopersicon.
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Lycopersicon esculentum"
                     /cultivar="Mountain Springs"
                     /clone_lib="tomato heat-shock/chilling tolerance lambda
                     gt11 library of D.R. Dilley"
                     /dev_stage="mature green fruit"
                     /tissue_type="pericarp"
                     /clone="pHCT1"
     CDS             81..584
                     /note="heat treatment/chilling tolerance related protein
                     from tomato fruit"
                     /codon_start=1
                     /product="class II small heat shock protein Le-HSP18.6"
                     /db_xref="PID:g1622945"
                     /translation="MSKNFSILKMDLRLLGIDNTPLFHTLHHMMEAAGEDSDKSVNA.
                     SRNYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKR.
                     EEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKP.
                     TIEVKVA"