HOMEWORK#7
Retrieving DNA sequence / GenBank
- due on 5/12
1. Sho-Hua cloned a gene in the lab. The part of DNA sequence is listed here:
1 tttgaaagac cccacccgta ggtggcaagc tagcttaagt aacgccactt tgcaaggcat
61 ggaaaaatac ataactgaga ataggaaagt tcagatcaag gtcaggaaca aagaaacagc
121 tgaataccaa acaggatatc tgtggtaagc ggttcctgcc ccggctcagg gccaagaaca
181 gatgagacag ctgagtgatg ggccaaacag gatatctgtg gtaagcagtt cctgccccgg
241 ctcggggcca agaacagatg gtccccagat gcggtccagc cctcagcagt ttctagtgaa
301 tcatcagatg tttccagggt gccccaagga cctgaaaatg accctgtacc ttatttgaac
361 taaccaatca gttcgcttct cgcttctgtt cgcgcgcttc cgctctccga gctcaataaa
421 agagcccaca acccctcact cggcgcgcca gtcttccgat agactgcgtc gcccgggtac
481 ccgtattccc aataaagcct cttgctgttt gcatccgaat cgtggtctcg ctgttccttg
541 ggagggtctc ctctgagtga ttgactaccc acgacggggg tctttcattt gggggctcgt
601 ccgggatttg gagacccctg cccagggacc accgacccac caccgggagg taagctggcc
661 agcaacttat ctgtgtctgt ccgattgtct agtgtctatg tttgatgtta tgcgcctgcg
721 tctgtactag ttagctaact agctctgtat ctggcggacc cgtggtggaa ctgacgagtt
781 ctgaacaccc ggccgcaacc ctgggagacg tcccagggac tttgggggcc gtttttgtgg
841 cccgacctga ggaagggagt cgatgtggaa tccgaccccg tcaggatatg tggttctggt
901 aggagacgag aacctaaaac agttcccgcc tccgtctgaa tttttgcttt cggtttggaa
961 ccgaagccgc gcgtcttgtc tgctgcagca tcgttctgtg ttgtctctgt ctgactgtgt
1021 ttctgtattt gtctgaaaat tagggccaga ctgttaccac tcccttaagt ttgaccttag
1081 gtcactggaa agatgtcgag cggatcgctc acaaccagtc ggtagatgtc aagaagagac
1141 gttgggttac cttctgctct gcagaatggc caacctttaa cgtcggatgg ccgcgagacg
1201 gcacctttaa ccgagacctc atcacccagg ttaagatcaa ggtcttttca cctggcccgc
1261 atggacaccc agaccaggtc ccctacatcg tgacctggga agccttggct tttgaccccc
1321 ctccctgggt caagcccttt gtacacccta agcctccgcc tcctcttcct ccatccgccc
1381 cgtctctccc ccttgaacct cctcgttcga ccccgcctcg atcctccctt tatccagccc
1441 tcactccttc tctaggcggg aattcgttag cttggtaagt gaccagctac agtcggaaac
1501 catcagcaag caggtatgta ctctccaggg tgggcctggc ttccccagtc aagactccag
1561 ggatttgagg gacgctgtgg gctcttctct tacatgtacc ttttgctagc ctcaaccctg
1621 actatcttcc aggtcattgt tccaacatgg ccctgtggat cgacaggatg caactcctgt
1681 cttgcattgc actaagtctt gcacttgtca caaacagtgc acctacttca agttctacaa
1741 agaaaacaca gctgcaactg gagcatttac tgctggattt acagatgatt ttgaatggaa
1801 ttaataatta caagaatccc aaactcaccc gcatgctcac atttaagttt tacatgccca
1861 agaaggccac agaactgaaa catctgcagt gtctagaaga agaactcaaa cctctggagg
1921 aagtgctaaa tttagctcaa agcaaaaact ttcacttaag gcctagggac ttaatcagca
1981 atatcaacgt aatagttctc gagctaaagg gatctgaaac aacattcatg tgtgaatatg
2041 ctgatgagac agccaccatt gtggaatttc tgaacagatg gattaccttt tgtcaaagca
2101 tcatctcaac actaacttga taattaagtg cttcccactt aaaacatatc aggatccgct
2161 gtggaatgtg tgtcagttag ggtgtggaaa gtccccaggc tccccagcag gcagaagtat
2221 gcaaagcatg catctcaatt agtcagcaac caggtgtgga aagtccccag gctccccagc
2281 aggcagaagt atgcaaagca tgcatctcaa ttagtcagca accatagtcc cgcccctaac
2341 tccgcccatc ccgcccctaa ctccgcccag ttccgcccat tctccgcccc atggctgact
2401 aatttttttt atttatgcag aggccgaggc cgcctcggcc tctgagctat tccagaagta
2461 gtgaggaggc ttttttggag gcctaggctt ttgcaaaaag cttgggctgc aggtcgaggc
2521 ggatctgatc aagagacagg atgaggatcg tttcgcatga ttgaacaaga tggattgcac
2581 gcaggttctc cggccgcttg ggtggagagg ctattcggct atgactgggc acaacagaca
2641 atcggctgct ctgatgccgc cgtgttccgg ctgtcagcgc aggggcgccc ggttcttttt
2701 gtcaagaccg acctgtccgg tgccctgaat gaactgcagg acgaggcagc gcggctatcg
2761 tggctggcca cgacgggcgt tccttgcgca gctgtgctcg acgttgtcac tgaagcggga
2821 agggactggc tgctattggg cgaagtgccg gggcaggatc tcctgtcatc tcaccttgct
2881 cctgccgaga aagtatccat catggctgat gcaatgcggc ggctgcatac gcttgatccg
2. How many nucleotide and protein sequence of Lycopersicon esculentum were know?