Homework #9  

  • Could you do multiple sequence alignment for Jason Lee for the protein that you translated for him on homework 7? Please select the proteins from at least seven different species to show color-coded plot of alignment .


    • Selected Sequence(s)
      OS ORYZA SATIVA (RICE).,
      OS DAUCUS CAROTA (CARROT).,
      OS PRUNUS DULCIS (ALMOND) (PRUNUS AMYGDALUS).,
      OS BETA VULGARIS (SUGAR BEET).,
      OS GOSSYPIUM HIRSUTUM (UPLAND COTTON).,
      OS SPINACIA OLERACEA (SPINACH).,
      OS NICOTIANA TABACUM (COMMON TOBACCO).,
       LPU66466-1 Lycopersicon pennellii lipid transfer protein 2 (LPltp2) (TOMATO)


     
     

  • Please also do the phylogenetic analysis for him
    •  
      Sequence
             Fasta label         Workbench label

    1  NLT3_ORYSA     OS ORYZA SATIVA (RICE).,
    2  NLTP_DAUCA    OS DAUCUS CAROTA (CARROT).,
    3  NLT1_PRUDU     OS PRUNUS DULCIS (ALMOND) (PRUNUS AMYGDALUS).,
    4  NLTP_BETVU     OS BETA VULGARIS (SUGAR BEET).,
    5  NLT2_GOSHI      OS GOSSYPIUM HIRSUTUM (UPLAND COTTON).,
    6  NLTP_SPIOL       OS SPINACIA OLERACEA (SPINACH).,
    7  NLT2_TOBAC     OS NICOTIANA TABACUM (COMMON TOBACCO).,
    8  LPU66466-1          Lycopersicon pennellii lipid transfer protein 2 (LPltp2) (TOMATO)
     

    PHYLIP rooted tree -Phenogram


     

    PHYLIP unrooted tree