Homework #7

  • due on 12/24
    • Jason Lee, a student in the department of Life Sciences,
    got the mRNA from a plant.
    Here is the sequence:
        
        1 atccactact tcatcataaa cctcacaact actattctat cttctcttct ctaattttca
       61 taatcattaa gaatggaaat ggttaacaag attgcatgct ttgtgctttt atgcatggta
      121 gtggttgcac cccatgcaga ggcactaact tgtggtcaag ttacatctac cttggctcct
      181 tgtctccctt atctaatgaa tcgcggtcct ctcggaggct gttgtggtgg tgttaagggt
      241 cttttgggtc aagcccagac tacagtagac cgacagaccg catgcacttg cctaaaatca
      301 gctgcttctt cttttacagg ccttgatttg ggcaaagctg ctagtctccc tagcacttgt
      361 agtgtcaaca tcccttacaa gatcagcccc tctactgact gctctaaagt tcagtaaagc
      421 tgatcatcag aatttggttt catgaggaga attaagaata agatagatag cattgatctt
      481 gcttatggat cctttctttc tatgttgtat cagttgtcac tttctgtttt ttctgtgttt
      541 cctttaaatt ctcgtatgta gtcgagtctt gtatcgaaat ttgacgattg attatattgt
      601 atcagttgtt actttctgtt ttcctgtgtt tcttttaaaa tcgtatgtag tcgagtcttg
      661 tatcgaaatt tcccgattgg ctatgttgta ttaatctaat ctttgataat acacatctat
      721 cttatttggt
    1. Translate the DNA sequence to protein sequence.
        SLRMEMVNKIACFVLLCMVVVAPHAEALTCGQ
        VTSTLAPCLPYLMNRGPLGGCCGGVKGLLGQA
        QTTVDRQTACTCLKSAASSFTGLDLGKAASLPST
        CSVNIPYKISPSTDCSKVQ

    2. Complete cds of this gene.
        Use the graphic view to explain all the features of this gene.

    3. Protein sequence analysis
        pI: 8.58
        mol. wt.:  12072.24
        secondary structure prediction
        hydrophobic profile
        homology search
        prosite scanning


     ¦^­º­¶