HOMEWORK#6

1. Please find the gene for the lipid transfer protein that you showed the structures in homework 5.
H.vulgare rearranged Ltp1 gene for lipid transfer
ACCESSION :  X59253
(View GenBank report)

2. How many sequences of DNA and Protein have been known for barley?

       Nucleotide (1719);Protein (1459)

3. How many BLAST hits you can get if you use the gene you found for this protein as the query sequence to search against non-redundant GenBank + EMBL + DDBJ + PDB sequence database? Please also show 10 sequences that produce significant alignments ( you just need to show their names and ID numbers ).

There are 47 Blast Hits on the Query Sequence.

emb|X59253|HVLTP1          H.vulgare rearranged Ltp1 gene for lipid transfer proteinemb|X60292|HVLTP1G       Hordeum vulgare gene for LTP 1
emb|X05168|TAMYR1        Barley mRNA for put. amylase or protease inhibitor
emb|X63669|TDLTPAA       T.durum mRNA for lipid transfer protein
emb|X71667|SVLTP1           S.vulgare ltp1 gene
emb|Z23271|OSLPTPRA      O.sativa lipid transfer protein gene, complete CDS
emb|X83435|OSLTPA15      O.sativa mRNA for lipid transfer protein, a15
emb|X71669|SVTLP1R         S.vulgare ltp1 mRNA
gb|AF017359.1|AF017359    Oryza sativa lipid transfer protein LPT II mRNA, complete cds
emb|X83434|OSLTPB1  O.sativa mRNA for lipid transfer protein, b1
 
 
 

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