Homework #9

  • Could you do multiple sequence alignment for Jason Lee for the protein that you translated for him on homework 7? Please select the proteins from at least seven different species to show color-coded plot of alignment .
  • >sp|Q03461|NLT2_TOBAC NONSPECIFIC LIPID-TRANSFER PROTEIN 2 PRECURSOR

    •            (LTP 2).

    >sp|P10976|NLTP_SPIOL NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSOR
               (LTP) (PHOSPHOLIPID TRANSFER PROTEIN) (PLTP).

    >sp|Q42762|NLT1_GOSHI NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSOR
               (LTP).

    >sp|Q43748|NLTP_BETVU NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSOR
               (LTP).

    >sp|Q43017|NLT1_PRUDU NONSPECIFIC LIPID-TRANSFER PROTEIN 1 PRECURSOR
               (LTP 1).

    >sp|P27631|NLTP_DAUCA NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSOR
               (LTP) (EXTRACELLULAR PROTEIN 2).

    >sp|Q42999|NLT3_ORYSA NONSPECIFIC LIPID-TRANSFER PROTEIN 3 PRECURSOR
               (LTP 3).

    >sp|O23758|NLTP_CICAR NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSOR
               (LTP).


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  • Please also do the phylogenetic analysis for him
    •