Homework 6

1. H.vulgare rearranged Ltp1 gene for lipid transfer
ACCESSION : X59253
GenBank report

2. Nucleotide sequences: 1719

Protein sequences: 1459

3. Distribution of 47 Blast Hits on the Query Sequence

View GenBank report

                                                                   Score
E
Sequences producing significant alignments:                        (bits)
Value

emb|X59253|HVLTP1
H.vulgare rearranged Ltp1 gene for lipid ...  2865  0.0
emb|X60292|HVLTP1G
Hordeum vulgare gene for LTP 1               2837  0.0
emb|X05168|TAMYR1
Barley mRNA for put. amylase or protease ...   813  0.0
emb|X63669|TDLTPAA
T.durum mRNA for lipid transfer protein       301
3e-79
emb|X71667|SVLTP1
S.vulgare ltp1 gene                             86
3e-14
emb|Z23271|OSLPTPRA
O.sativa lipid transfer protein gene, c...    86
3e-14
emb|X83435|OSLTPA15
O.sativa mRNA for lipid transfer protei...    80
2e-12
emb|X71669|SVTLP1R
S.vulgare ltp1 mRNA                            80
2e-12
gb|AF017359.1|AF017359
Oryza sativa lipid transfer protein ...    78  8e-12
emb|X83434|OSLTPB1
O.sativa mRNA for lipid transfer protein...    78
8e-12
gb|AF017360.1|AF017360
Oryza sativa lipid transfer protein ...    72  5e-10
emb|Y08691.1|OSLPI
O.sativa mRNA for lipid transfer protein...    72
5e-10
gb|U66105|ZMU66105
Zea mays phospholipid transfer protein m...    72
5e-10
gb|M57249|MZEPLTPA
Maize phospholipid transfer protein mRNA...    72
5e-10
gb|U31766|OSU31766
Oryza sativa lipid transfer protein prec...    70
2e-09
gb|J04176|MZEPLTP
Maize phospholipid transfer protein mRNA,...    70
2e-09
gb|AF017361.1|AF017361
Oryza sativa lipid transfer protein ...    64  1e-07
emb|X71668|SVLTP2
S.vulgare ltp2 gene                             64
1e-07
gb|AF017358.1|AF017358
Oryza sativa lipid transfer protein ...    58  7e-06
dbj|D29994|RICEN42
Rice mRNA EN4, partial sequence                54
1e-04
dbj|D10955|RIC323PTP
Rice mRNA for Phospholipid transfer pr...    50  0.002
emb|AL133292.1|ATF13I12
Arabidopsis thaliana DNA chromosome...    46  0.028
emb|AL096859.2|ATT6H20
Arabidopsis thaliana DNA chromosome ...    46  0.028
emb|AL031682.1|HS873P14
Human DNA sequence from clone 873P1...    46  0.028
gb|U18127|HVU18127
Hordeum vulgare phospholipid transfer pr...    46
0.028
gb|AF051369|AF051369
Oryza sativa lipid transfer protein mR...    44  0.11
emb|X04077|STPATP1
Potato patatin pseudogene (SB6B)               44  0.11
gb|AF069442|AF069442
Arabidopsis thaliana BAC T4I9, chromos...    42  0.44
gb|AF109195.1|AF109195
Hordeum vulgare lipid transfer prote...    40  1.7
gb|AF102513|AF102513
Pantoea citrea regulatory protein GdhB...    40  1.7
gb|AF072890|AF072890
Neisseria gonorrhoeae lactoferrin bind...    40  1.7
gb|AC006256|AC006256
Homo sapiens chromosome 18, clone hRPK...    40  1.7
gb|AC006071|AC006071
Homo sapiens chromosome 17, clone hCIT...    40  1.7
emb|AL021147.1|CEH32K21
Caenorhabditis elegans cosmid H32K2...    40  1.7
emb|Y14573.1|HVCH4H
Hordeum vulgare DNA for chromosome 4H         40  1.7
emb|Z81542.1|CEF49A5
Caenorhabditis elegans cosmid F49A5, c...    40  1.7
emb|Z46343.1|CET23F11
Caenorhabditis elegans cosmid T23F11,...    40  1.7