Protein Tools

Quiz

1. Protein translation

  • Go to ExPASY Molecular Biology Server - http://www.expasy.ch/
  • Go to DNA -> Protein under Tools and Software Packages
  • Go to Translate to translate a nucleotide (DNA/RNA) sequence to a protein sequence.
  • Paste the gene sequence you find from Quiz in the Box
  • Choose out format : 
  • Press 
  • Go to the correct Frame that you choosed
  • Select one of the "Methionine" or one of the highlighted residues following a Stop codon

2. Sequence searching

  • Go to " Direct BLAST submission at NCBI "
  • Choose nr database
  • Use default values
  • Press 

3. Sequence analysis tools

  • ProtParam
  • ProtScale
  • Compute pI/Mw
  • PeptideMass

4. Prosite

  • Go to ProfileScan
  • Database: 
  • Sensitivity: 
  • Sort hits by: 
  • Press 

5. Model building

  • Direct submission to SWISS-MODEL
  • Fill out your E-Mail address in the box
  • Fill out your name in the box
  • Press 
  • Wait for Swiss reply!