DNA DataBase

  • GenBank (NCBI) - http://www.ncbi.nlm.nih.gov/
  • EMBL Nucleotide Sequence Database (EBI) - http://www.ebi.ac.uk/embl/
  • DNA Data Bank of Japan (DDBJ) - http://www.ddbj.nig.ac.jp/
  • Genome Sequence DataBase (NCGR) - http://www.ncgr.org/research/sequence/
  • FlyBase - http://flybase.bio.indiana.edu/


    • Protein DataBase

  • Protein Data Bank (RCSB) - http://www.rcsb.org/pdb/
  • SWISS-PROT- Annotated protein sequence database - http://www.expasy.ch/sprot/
  • PIR-International Protein Sequence Database - http://www-nbrf.georgetown.edu/pir/
  • PROSITE - Database of protein families and domains - http://www.expasy.ch/prosite/
  • Enzyme nomenclature database -  http://www.expasy.ch/enzyme/
  • SCOP - Structural Classification Of Proteins - http://scop.mrc-lmb.cam.ac.uk/scop/index.html


    • Miscellaneous DataBase

  • REBASE - The Restriction Enzyme Database - http://rebase.neb.com/
  • BTKbase, mutation database for X-linked agammaglobulinemia (XLA) - http://www.uta.fi/laitokset/imt/bioinfo/BTKbase/
  • FSSP - Fold classification based on Structure-Structure alignment of Proteins - http://www2.ebi.ac.uk/dali/fssp/
  • HOMSTRAD - Homology Structure Alignments Database - http://www-cryst.bioc.cam.ac.uk/data/align/

    • Molecular Biology Server

  • ExPASy - Expert Protein Analysis System - http://expasy.nhri.org.tw/
  • Biology WorkBench - http://workbench.sdsc.edu/

    • Genomic Analysis Tools

  • BLAST - Basic Local Alignment Search Tool at
  • NCBI - http://www.ncbi.nlm.nih.gov/BLAST/
  • DDBJ - http://www.ddbj.nig.ac.jp/E-mail/homology.html
  • EBI - http://www.ebi.ac.uk/blast2/
  • Fasta at
  • EBI - http://www2.ebi.ac.uk/fasta3/
  • DDBJ - http://www.dna.affrc.go.jp/htdocs/Blast/fasta.html
  • Pairwise Sequence Alignment at
  • ExPASy - http://expasy.nhri.org.tw/tools/sim-prot.html
  • BCM Search Launcher - http://dot.imgen.bcm.tmc.edu:9331/seq-search/alignment.html
  • EMBnet - http://www.ch.embnet.org/software/LALIGN_form.html
  • Multiple Sequence Alignments at
  • BCM Search Launcher - http://dot.imgen.bcm.tmc.edu:9331/multi-align/multi-align.html
  • DDBJ - http://www.ddbj.nig.ac.jp/E-mail/homology.html
  • EBI - http://www.ebi.ac.uk/clustalw/
  • DNA - Protein Translator at
  • ExPASy - Translate Tool - http://expasy.nhri.org.tw/tools/dna.html
  • NCBI - ORF Finder - http://www.ncbi.nlm.nih.gov/gorf/gorf.html
  • Entelechon - Backtranslation - http://www.entelechon.com/english/backtranslation.html
  • Sanger Centre - Genewise - http://www.sanger.ac.uk/Software/Wise2/genewiseform.shtml
  • Protein 3D analysis at
  • Sanger Centre - Thread 1- to 3-D - http://genomic.sanger.ac.uk/123D/123D.shtml
  • BMM - Recognise a Fold 3D-pssm - http://www.bmm.icnet.uk/~3dpssm/
  • Sanger Centre - Compare two PDB structures - http://genomic.sanger.ac.uk/123D/prerun.shtml
  • GRASS Browser -  Graphical Representation and Analysis of Structure Server  - http://trantor.bioc.columbia.edu/GRASS/surfserv_enter.cgi
  • Protein 3D model building at
  • ExPASy - SwissModel - http://www.expasy.ch/swissmod/SWISS-MODEL.html
  • CBS - CPHmodel - http://www.cbs.dtu.dk/services/CPHmodels/

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