BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.1 [Aug-1-2001]MatrixBLOSUM62PAM30PAM70PAM250BLOSUM90BLOSUM50gap open: gap extension: x_dropoff: expect: wordsize: Filter Sequence 1 lcl|seq_1 Length 756 (1 .. 756) Sequence 2 gi 7304079 Mlh1 gene product [Drosophila melanogaster] Length 664 (1 .. 664) NOTE:The statistics (bitscore and expect value) is calculated based on the size of nr database Score = 652 bits (1682), Expect = 0.0 Identities = 348/751 (46%), Positives = 476/751 (63%), Gaps = 94/751 (12%) Query: 6 GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNG 65 GVIR+LDE VVNRIAAGE+IQRPANA+KE++EN LDA+ST IQV VK GGLKL+QIQDNG Sbjct: 8 GVIRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSTHIQVQVKAGGLKLLQIQDNG 67 Query: 66 TGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCA 125 TGIR+EDL IVCERFTTSKL FEDL+ I+T+GFRGEALASISHVAH++I TKTA KC Sbjct: 68 TGIRREDLAIVCERFTTSKLTRFEDLSQIATFGFRGEALASISHVAHLSIQTKTAKEKCG 127 Query: 126 YRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSV 185 Y+A+Y+DGKL+ PKPCAGNQGT I +EDLFYN+ RR+AL++P+EE+ ++ EV+ RY+V Sbjct: 128 YKATYADGKLQGQPKPCAGNQGTIICIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAV 187 Query: 186 HNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGY 245 HN + F+++KQG+ +RT +S +NIR I+G A+S+EL+E D+ F+ Sbjct: 188 HNPRVGFTLRKQGDAQPALRTPVASSRSENIRIIYGAAISKELLEFSHRDEVYKFEAECL 247 Query: 246 ISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305 I+ NYS KKC LLFIN RLVEST+LR +++++YA YLP+ HPF+Y+SL + PQN+DV Sbjct: 248 ITQVNYSAKKCQMLLFINQRLVESTALRTSVDSIYATYLPRGHHPFVYMSLTLPPQNLDV 307 Query: 306 NVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMVKSTTS 365 NVHPTKHEVHFL++E I++ ++Q +E++LLGSN++R ++ Q LPG Sbjct: 308 NVHPTKHEVHFLYQEEIVDSIKQQVEARLLGSNATRTFYKQLRLPG-----------APD 356 Query: 366 LTSSSTSGSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDISSGRAR 425 L + + + ++Y +MVRTDS EQKLD FL PL K SG + Sbjct: 357 LDETQLADKTQRIYPKEMVRTDSTEQKLDKFLAPLVKS----------------DSGVSS 400 Query: 426 QQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHREDSDVEMVEDD 485 +E LP E+ Sbjct: 401 SSSQEASRLP-----------------------------------------------EES 413 Query: 486 SRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQT 545 R +TAA + R + L+SVL +++ + Q LR L N +VGCV+ + AL QH+T Sbjct: 414 FR--VTAA--KKSREVRLSSVLDMRKRVERQCSVQLRSTLKNLVYVGCVDERRALFQHET 469 Query: 546 KLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKE 605 +LY+ NT SEELFYQ +IY+F N + +S P PL +L +L+L+S +GWT EDG K Sbjct: 470 RLYMCNTRSFSEELFYQRMIYEFQNCSEITISPPLPLKELLILSLESEAAGWTPEDGDKA 529 Query: 606 GLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRLATEVN 665 LA+ + L KKA ++ +YF L I E+G L LP L+ + P + LP+++LRLATEV+ Sbjct: 530 ELADGAADILLKKAPIMREYFGLRISEDGMLESLPSLLHQHRPCVAHLPVYLLRLATEVD 589 Query: 666 WDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIVYKALR 725 W++E CFE+ +E A FY+ Q G+ +WT+EH+++ A + Sbjct: 590 WEQETRCFETFCRETARFYA--------------QLDWREGATAGFSRWTMEHVLFPAFK 635 Query: 726 SHILPPKHFTEDGNILQLANLPDLYKVFERC 756 ++LPP + I +L NLP LYKVFERC Sbjct: 636 KYLLPPPRIKD--QIYELTNLPTLYKVFERC 664 CPU time: 0.19 user secs. 0.03 sys. secs 0.22 total secs. Gapped Lambda K H 0.320 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4163 Number of Sequences: 0 Number of extensions: 274 Number of successful extensions: 5 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1 length of query: 664 length of database: 254,026,857 effective HSP length: 128 effective length of query: 536 effective length of database: 205,057,897 effective search space: 109911032792 effective search space used: 109911032792 T: 9 A: 40 X1: 16 ( 7.4 bits) X2: 129 (49.7 bits) X3: 129 (49.7 bits) S1: 41 (21.8 bits) S2: 75 (33.5 bits)
NOTE:The statistics (bitscore and expect value) is calculated based on the size of nr database
Score = 652 bits (1682), Expect = 0.0 Identities = 348/751 (46%), Positives = 476/751 (63%), Gaps = 94/751 (12%)
Query: 6 GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNG 65 GVIR+LDE VVNRIAAGE+IQRPANA+KE++EN LDA+ST IQV VK GGLKL+QIQDNG Sbjct: 8 GVIRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSTHIQVQVKAGGLKLLQIQDNG 67 Query: 66 TGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCA 125 TGIR+EDL IVCERFTTSKL FEDL+ I+T+GFRGEALASISHVAH++I TKTA KC Sbjct: 68 TGIRREDLAIVCERFTTSKLTRFEDLSQIATFGFRGEALASISHVAHLSIQTKTAKEKCG 127 Query: 126 YRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSV 185 Y+A+Y+DGKL+ PKPCAGNQGT I +EDLFYN+ RR+AL++P+EE+ ++ EV+ RY+V Sbjct: 128 YKATYADGKLQGQPKPCAGNQGTIICIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAV 187 Query: 186 HNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGY 245 HN + F+++KQG+ +RT +S +NIR I+G A+S+EL+E D+ F+ Sbjct: 188 HNPRVGFTLRKQGDAQPALRTPVASSRSENIRIIYGAAISKELLEFSHRDEVYKFEAECL 247 Query: 246 ISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305 I+ NYS KKC LLFIN RLVEST+LR +++++YA YLP+ HPF+Y+SL + PQN+DV Sbjct: 248 ITQVNYSAKKCQMLLFINQRLVESTALRTSVDSIYATYLPRGHHPFVYMSLTLPPQNLDV 307 Query: 306 NVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMVKSTTS 365 NVHPTKHEVHFL++E I++ ++Q +E++LLGSN++R ++ Q LPG Sbjct: 308 NVHPTKHEVHFLYQEEIVDSIKQQVEARLLGSNATRTFYKQLRLPG-----------APD 356 Query: 366 LTSSSTSGSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQPQAIVTEDKTDISSGRAR 425 L + + + ++Y +MVRTDS EQKLD FL PL K SG + Sbjct: 357 LDETQLADKTQRIYPKEMVRTDSTEQKLDKFLAPLVKS----------------DSGVSS 400 Query: 426 QQDEEMLELPAPAEVAAKNQSLEGDTTKGTSEMSEKRGPTSSNPRKRHREDSDVEMVEDD 485 +E LP E+ Sbjct: 401 SSSQEASRLP-----------------------------------------------EES 413 Query: 486 SRKEMTAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQT 545 R +TAA + R + L+SVL +++ + Q LR L N +VGCV+ + AL QH+T Sbjct: 414 FR--VTAA--KKSREVRLSSVLDMRKRVERQCSVQLRSTLKNLVYVGCVDERRALFQHET 469 Query: 546 KLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGPKE 605 +LY+ NT SEELFYQ +IY+F N + +S P PL +L +L+L+S +GWT EDG K Sbjct: 470 RLYMCNTRSFSEELFYQRMIYEFQNCSEITISPPLPLKELLILSLESEAAGWTPEDGDKA 529 Query: 606 GLAEYIVEFLKKKAEMLADYFSLEIDEEGNLIGLPLLIDNYVPPLEGLPIFILRLATEVN 665 LA+ + L KKA ++ +YF L I E+G L LP L+ + P + LP+++LRLATEV+ Sbjct: 530 ELADGAADILLKKAPIMREYFGLRISEDGMLESLPSLLHQHRPCVAHLPVYLLRLATEVD 589 Query: 666 WDEEKECFESLSKECAMFYSIRKQYISEESTLSGQQSEVPGSIPNSWKWTVEHIVYKALR 725 W++E CFE+ +E A FY+ Q G+ +WT+EH+++ A + Sbjct: 590 WEQETRCFETFCRETARFYA--------------QLDWREGATAGFSRWTMEHVLFPAFK 635 Query: 726 SHILPPKHFTEDGNILQLANLPDLYKVFERC 756 ++LPP + I +L NLP LYKVFERC Sbjct: 636 KYLLPPPRIKD--QIYELTNLPTLYKVFERC 664
CPU time: 0.19 user secs. 0.03 sys. secs 0.22 total secs. Gapped Lambda K H 0.320 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4163 Number of Sequences: 0 Number of extensions: 274 Number of successful extensions: 5 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1 length of query: 664 length of database: 254,026,857 effective HSP length: 128 effective length of query: 536 effective length of database: 205,057,897 effective search space: 109911032792 effective search space used: 109911032792 T: 9 A: 40 X1: 16 ( 7.4 bits) X2: 129 (49.7 bits) X3: 129 (49.7 bits) S1: 41 (21.8 bits) S2: 75 (33.5 bits)
