AlignMaster output
============================================================

Length of target sequence: 141 residues

Searching sequences of known 3D structures
Found 1QPWC.pdb with P(N)=8e-41
Found 1QPWA.pdb with P(N)=8e-41
Found 2DHBA.pdb with P(N)=8e-41
Found 2MHBA.pdb with P(N)=8e-41
Found 2PGHA.pdb with P(N)=8e-41
Found 2PGHC.pdb with P(N)=8e-41
Found 1IBEA.pdb with P(N)=2e-40
Found 1AJ9A.pdb with P(N)=1e-39
Found 2HHEA.pdb with P(N)=2e-39
Found 1HDBC.pdb with P(N)=2e-39
Found 2HBSA.pdb with P(N)=2e-39
Found 3HHBA.pdb with P(N)=2e-39
Found 2HBCA.pdb with P(N)=2e-39
Found 2HHEC.pdb with P(N)=2e-39
Found 4HHBA.pdb with P(N)=2e-39
Found 4HHBC.pdb with P(N)=2e-39
Found 1NIHA.pdb with P(N)=2e-39
Found 2HCOA.pdb with P(N)=2e-39
Found 6HBWA.pdb with P(N)=2e-39
Found 2HBSE.pdb with P(N)=2e-39
Found 2HBSC.pdb with P(N)=2e-39
Found 2HBSG.pdb with P(N)=2e-39
Found 1BBBA.pdb with P(N)=2e-39
Found 2HBFA.pdb with P(N)=2e-39
Found 2HBEA.pdb with P(N)=2e-39
Found 2HBDA.pdb with P(N)=2e-39
Found 1HBBA.pdb with P(N)=2e-39
Found 1THBA.pdb with P(N)=2e-39
Found 1THBC.pdb with P(N)=2e-39
Found 1SDLC.pdb with P(N)=2e-39
Found 2HHBC.pdb with P(N)=2e-39
Found 1QSIC.pdb with P(N)=2e-39
Found 2HHBA.pdb with P(N)=2e-39
Found 6HBWC.pdb with P(N)=2e-39
Found 1QSIA.pdb with P(N)=2e-39
Found 1QSHC.pdb with P(N)=2e-39
Found 1QSHA.pdb with P(N)=2e-39
Found 1NIHC.pdb with P(N)=2e-39
Found 1CLSA.pdb with P(N)=2e-39
Found 1HHOA.pdb with P(N)=2e-39
Found 1HGCC.pdb with P(N)=2e-39
Found 1HGCA.pdb with P(N)=2e-39
Found 1HGBA.pdb with P(N)=2e-39
Found 1HGBC.pdb with P(N)=2e-39
Found 1HGAA.pdb with P(N)=2e-39
Found 1HGAC.pdb with P(N)=2e-39
Found 1BBBC.pdb with P(N)=2e-39
Found 1HDBA.pdb with P(N)=2e-39
Found 1HCOA.pdb with P(N)=2e-39
Found 1HBSE.pdb with P(N)=2e-39
Found 1HBSG.pdb with P(N)=2e-39
Found 1HBSC.pdb with P(N)=2e-39
Found 1HBSA.pdb with P(N)=2e-39
Found 1HBBC.pdb with P(N)=2e-39
Found 1SDKC.pdb with P(N)=2e-39
Found 1HBAA.pdb with P(N)=2e-39
Found 1HBAC.pdb with P(N)=2e-39
Found 1HACA.pdb with P(N)=2e-39
Found 1HACC.pdb with P(N)=2e-39
Found 1HABC.pdb with P(N)=2e-39
Found 1HABA.pdb with P(N)=2e-39
Found 1GBVA.pdb with P(N)=2e-39
Found 2HHDA.pdb with P(N)=2e-39
Found 1FDHA.pdb with P(N)=2e-39
Found 1GBUA.pdb with P(N)=2e-39
Found 1SDKA.pdb with P(N)=2e-39
Found 1DXVC.pdb with P(N)=2e-39
Found 1DXVA.pdb with P(N)=2e-39
Found 1DXUC.pdb with P(N)=2e-39
Found 1DXUA.pdb with P(N)=2e-39
Found 1DXTC.pdb with P(N)=2e-39
Found 1DXTA.pdb with P(N)=2e-39
Found 1DKEA.pdb with P(N)=2e-39
Found 1DKEC.pdb with P(N)=2e-39
Found 1COHC.pdb with P(N)=2e-39
Found 1COHA.pdb with P(N)=2e-39
Found 1CMYC.pdb with P(N)=2e-39
Found 1CMYA.pdb with P(N)=2e-39
Found 1GBUC.pdb with P(N)=2e-39
Found 1CLSC.pdb with P(N)=2e-39
Found 1C7DA.pdb with P(N)=2e-39
Found 1C7CA.pdb with P(N)=2e-39
Found 1C7BC.pdb with P(N)=2e-39
Found 1C7BA.pdb with P(N)=2e-39
Found 1BZZA.pdb with P(N)=2e-39
Found 1BZZC.pdb with P(N)=2e-39
Found 1BZ1A.pdb with P(N)=2e-39
Found 1BZ1C.pdb with P(N)=2e-39
Found 1BZ0C.pdb with P(N)=2e-39
Found 1BZ0A.pdb with P(N)=2e-39
Found 1BUWC.pdb with P(N)=2e-39
Found 1BUWA.pdb with P(N)=2e-39
Found 1BIJC.pdb with P(N)=2e-39
Found 1BIJA.pdb with P(N)=2e-39
Found 1GBVC.pdb with P(N)=2e-39
Found 1SDLA.pdb with P(N)=2e-39
Found 1BABA.pdb with P(N)=2e-39
Found 2HHDC.pdb with P(N)=2e-39

Extracting template sequences

Running pair-wise alignments with target sequence
Sequence identity of templates with target:

1QPWC.pdb: 62.9 % identity
1QPWA.pdb: 62.9 % identity
2DHBA.pdb: 62.1 % identity
2MHBA.pdb: 62.1 % identity
2PGHA.pdb: 62.9 % identity
2PGHC.pdb: 62.9 % identity
1IBEA.pdb: 61.4 % identity
1AJ9A.pdb: 58.6 % identity
2HHEA.pdb: 58.6 % identity
1HDBC.pdb: 58.6 % identity
2HBSA.pdb: 58.6 % identity
3HHBA.pdb: 58.6 % identity
2HBCA.pdb: 58.6 % identity
2HHEC.pdb: 58.6 % identity
4HHBA.pdb: 58.6 % identity
4HHBC.pdb: 58.6 % identity
1NIHA.pdb: 58.6 % identity
2HCOA.pdb: 58.6 % identity
6HBWA.pdb: 58.6 % identity
2HBSE.pdb: 58.6 % identity
2HBSC.pdb: 58.6 % identity
2HBSG.pdb: 58.6 % identity
1BBBA.pdb: 58.6 % identity
2HBFA.pdb: 58.6 % identity
2HBEA.pdb: 58.6 % identity
2HBDA.pdb: 58.6 % identity
1HBBA.pdb: 58.6 % identity
1THBA.pdb: 58.6 % identity
1THBC.pdb: 58.6 % identity
1SDLC.pdb: 58.6 % identity
2HHBC.pdb: 58.6 % identity
1QSIC.pdb: 58.6 % identity
2HHBA.pdb: 58.6 % identity
6HBWC.pdb: 58.6 % identity
1QSIA.pdb: 58.6 % identity
1QSHC.pdb: 58.6 % identity
1QSHA.pdb: 58.6 % identity
1NIHC.pdb: 58.6 % identity
1CLSA.pdb: 58.6 % identity
1HHOA.pdb: 58.6 % identity
1HGCC.pdb: 58.6 % identity
1HGCA.pdb: 58.6 % identity
1HGBA.pdb: 58.6 % identity
1HGBC.pdb: 58.6 % identity
1HGAA.pdb: 58.6 % identity
1HGAC.pdb: 58.6 % identity
1BBBC.pdb: 58.6 % identity
1HDBA.pdb: 58.6 % identity
1HCOA.pdb: 58.6 % identity
1HBSE.pdb: 58.6 % identity
1HBSG.pdb: 58.6 % identity
1HBSC.pdb: 58.6 % identity
1HBSA.pdb: 58.6 % identity
1HBBC.pdb: 58.6 % identity
1SDKC.pdb: 58.6 % identity
1HBAA.pdb: 58.6 % identity
1HBAC.pdb: 58.6 % identity
1HACA.pdb: 58.6 % identity
1HACC.pdb: 58.6 % identity
1HABC.pdb: 58.6 % identity
1HABA.pdb: 58.6 % identity
1GBVA.pdb: 58.6 % identity
2HHDA.pdb: 58.6 % identity
1FDHA.pdb: 58.6 % identity
1GBUA.pdb: 58.6 % identity
1SDKA.pdb: 58.6 % identity
1DXVC.pdb: 58.6 % identity
1DXVA.pdb: 58.6 % identity
1DXUC.pdb: 58.6 % identity
1DXUA.pdb: 58.6 % identity
1DXTC.pdb: 58.6 % identity
1DXTA.pdb: 58.6 % identity
1DKEA.pdb: 58.6 % identity
1DKEC.pdb: 58.6 % identity
1COHC.pdb: 58.6 % identity
1COHA.pdb: 58.6 % identity
1CMYC.pdb: 58.6 % identity
1CMYA.pdb: 58.6 % identity
1GBUC.pdb: 58.6 % identity
1CLSC.pdb: 58.6 % identity
1C7DA.pdb: 58.6 % identity
1C7CA.pdb: 58.6 % identity
1C7BC.pdb: 58.6 % identity
1C7BA.pdb: 58.6 % identity
1BZZA.pdb: 58.6 % identity
1BZZC.pdb: 58.6 % identity
1BZ1A.pdb: 58.6 % identity
1BZ1C.pdb: 58.6 % identity
1BZ0C.pdb: 58.6 % identity
1BZ0A.pdb: 58.6 % identity
1BUWC.pdb: 58.6 % identity
1BUWA.pdb: 58.6 % identity
1BIJC.pdb: 58.6 % identity
1BIJA.pdb: 58.6 % identity
1GBVC.pdb: 58.6 % identity
1SDLA.pdb: 58.6 % identity
1BABA.pdb: 58.6 % identity
2HHDC.pdb: 58.6 % identity

Looking for template groups
Global alignment overview:

Taget Sequence: |======================================================================|
1QPWC.pdb       |---------------------------------------------------------------------
1QPWA.pdb       |---------------------------------------------------------------------
2DHBA.pdb       |---------------------------------------------------------------------
2MHBA.pdb       |---------------------------------------------------------------------
2PGHA.pdb       |---------------------------------------------------------------------
2PGHC.pdb       |---------------------------------------------------------------------
1IBEA.pdb       |---------------------------------------------------------------------
1AJ9A.pdb       |---------------------------------------------------------------------
2HHEA.pdb       |---------------------------------------------------------------------
1HDBC.pdb       |---------------------------------------------------------------------
2HBSA.pdb       |---------------------------------------------------------------------
3HHBA.pdb       |---------------------------------------------------------------------
2HBCA.pdb       |---------------------------------------------------------------------
2HHEC.pdb       |---------------------------------------------------------------------
4HHBA.pdb       |---------------------------------------------------------------------
4HHBC.pdb       |---------------------------------------------------------------------
1NIHA.pdb       |---------------------------------------------------------------------
2HCOA.pdb       |---------------------------------------------------------------------
6HBWA.pdb       |---------------------------------------------------------------------
2HBSE.pdb       |---------------------------------------------------------------------
2HBSC.pdb       |---------------------------------------------------------------------
2HBSG.pdb       |---------------------------------------------------------------------
1BBBA.pdb       |---------------------------------------------------------------------
2HBFA.pdb       |---------------------------------------------------------------------
2HBEA.pdb       |---------------------------------------------------------------------
2HBDA.pdb       |---------------------------------------------------------------------
1HBBA.pdb       |---------------------------------------------------------------------
1THBA.pdb       |---------------------------------------------------------------------
1THBC.pdb       |---------------------------------------------------------------------
1SDLC.pdb       |---------------------------------------------------------------------
2HHBC.pdb       |---------------------------------------------------------------------
1QSIC.pdb       |---------------------------------------------------------------------
2HHBA.pdb       |---------------------------------------------------------------------
6HBWC.pdb       |---------------------------------------------------------------------
1QSIA.pdb       |---------------------------------------------------------------------
1QSHC.pdb       |---------------------------------------------------------------------
1QSHA.pdb       |---------------------------------------------------------------------
1NIHC.pdb       |---------------------------------------------------------------------
1CLSA.pdb       |---------------------------------------------------------------------
1HHOA.pdb       |---------------------------------------------------------------------
1HGCC.pdb       |---------------------------------------------------------------------
1HGCA.pdb       |---------------------------------------------------------------------
1HGBA.pdb       |---------------------------------------------------------------------
1HGBC.pdb       |---------------------------------------------------------------------
1HGAA.pdb       |---------------------------------------------------------------------
1HGAC.pdb       |---------------------------------------------------------------------
1BBBC.pdb       |---------------------------------------------------------------------
1HDBA.pdb       |---------------------------------------------------------------------
1HCOA.pdb       |---------------------------------------------------------------------
1HBSE.pdb       |---------------------------------------------------------------------
1HBSG.pdb       |---------------------------------------------------------------------
1HBSC.pdb       |---------------------------------------------------------------------
1HBSA.pdb       |---------------------------------------------------------------------
1HBBC.pdb       |---------------------------------------------------------------------
1SDKC.pdb       |---------------------------------------------------------------------
1HBAA.pdb       |---------------------------------------------------------------------
1HBAC.pdb       |---------------------------------------------------------------------
1HACA.pdb       |---------------------------------------------------------------------
1HACC.pdb       |---------------------------------------------------------------------
1HABC.pdb       |---------------------------------------------------------------------
1HABA.pdb       |---------------------------------------------------------------------
1GBVA.pdb       |---------------------------------------------------------------------
2HHDA.pdb       |---------------------------------------------------------------------
1FDHA.pdb       |---------------------------------------------------------------------
1GBUA.pdb       |---------------------------------------------------------------------
1SDKA.pdb       |---------------------------------------------------------------------
1DXVC.pdb       |---------------------------------------------------------------------
1DXVA.pdb       |---------------------------------------------------------------------
1DXUC.pdb       |---------------------------------------------------------------------
1DXUA.pdb       |---------------------------------------------------------------------
1DXTC.pdb       |---------------------------------------------------------------------
1DXTA.pdb       |---------------------------------------------------------------------
1DKEA.pdb       |---------------------------------------------------------------------
1DKEC.pdb       |---------------------------------------------------------------------
1COHC.pdb       |---------------------------------------------------------------------
1COHA.pdb       |---------------------------------------------------------------------
1CMYC.pdb       |---------------------------------------------------------------------
1CMYA.pdb       |---------------------------------------------------------------------
1GBUC.pdb       |---------------------------------------------------------------------
1CLSC.pdb       |---------------------------------------------------------------------
1C7DA.pdb       |---------------------------------------------------------------------
1C7CA.pdb       |---------------------------------------------------------------------
1C7BC.pdb       |---------------------------------------------------------------------
1C7BA.pdb       |---------------------------------------------------------------------
1BZZA.pdb       |---------------------------------------------------------------------
1BZZC.pdb       |---------------------------------------------------------------------
1BZ1A.pdb       |---------------------------------------------------------------------
1BZ1C.pdb       |---------------------------------------------------------------------
1BZ0C.pdb       |---------------------------------------------------------------------
1BZ0A.pdb       |---------------------------------------------------------------------
1BUWC.pdb       |---------------------------------------------------------------------
1BUWA.pdb       |---------------------------------------------------------------------
1BIJC.pdb       |---------------------------------------------------------------------
1BIJA.pdb       |---------------------------------------------------------------------
1GBVC.pdb       |---------------------------------------------------------------------
1SDLA.pdb       |---------------------------------------------------------------------
1BABA.pdb       |---------------------------------------------------------------------
2HHDC.pdb       |---------------------------------------------------------------------

AlignMaster found 1 regions to model separately:
        1: Using template(s)   1AJ9A.pdb 1BABA.pdb 1BBBA.pdb 1BBBC.pdb 1BIJA.pdb 1BIJC.pdb 1BUWA.pdb 1BUWC.pdb 1BZ0A.pdb 1BZ0C.pdb 1BZ1A.pdb 1BZ1C.pdb 1BZZA.pdb 1BZZC.pdb 1C7BA.pdb 1C7BC.pdb 1C7CA.pdb 1C7DA.pdb 1CLSA.pdb 1CLSC.pdb 1CMYA.pdb 1CMYC.pdb 1COHA.pdb 1COHC.pdb 1DKEA.pdb 1DKEC.pdb 1DXTA.pdb 1DXTC.pdb 1DXUA.pdb 1DXUC.pdb 1DXVA.pdb 1DXVC.pdb 1FDHA.pdb 1GBUA.pdb 1GBUC.pdb 1GBVA.pdb 1GBVC.pdb 1HABA.pdb 1HABC.pdb 1HACA.pdb 1HACC.pdb 1HBAA.pdb 1HBAC.pdb 1HBBA.pdb 1HBBC.pdb 1HBSA.pdb 1HBSC.pdb 1HBSE.pdb 1HBSG.pdb 1HCOA.pdb 1HDBA.pdb 1HDBC.pdb 1HGAA.pdb 1HGAC.pdb 1HGBA.pdb 1HGBC.pdb 1HGCA.pdb 1HGCC.pdb 1HHOA.pdb 1IBEA.pdb 1NIHA.pdb 1NIHC.pdb 1QPWA.pdb 1QPWC.pdb 1QSHA.pdb 1QSHC.pdb 1QSIA.pdb 1QSIC.pdb 1SDKA.pdb 1SDKC.pdb 1SDLA.pdb 1SDLC.pdb 1THBA.pdb 1THBC.pdb 2DHBA.pdb 2HBCA.pdb 2HBDA.pdb 2HBEA.pdb 2HBFA.pdb 2HBSA.pdb 2HBSC.pdb 2HBSE.pdb 2HBSG.pdb 2HCOA.pdb 2HHBA.pdb 2HHBC.pdb 2HHDA.pdb 2HHDC.pdb 2HHEA.pdb 2HHEC.pdb 2MHBA.pdb 2PGHA.pdb 2PGHC.pdb 3HHBA.pdb 4HHBA.pdb 4HHBC.pdb 6HBWA.pdb 6HBWC.pdb
 

Creating Batch files for ProMod (if any):
        Batch.1: residues 1 - 141 of submitted sequence.

Exiting AlignMaster
 

ProModII trace log for Batch.1
============================================================

ProModII: ProMod     version 3.5 date Jul 19 1999 17:15
ProModII: SPDBV      version 3.5
ProModII: Loop       version 2.60
ProModII: LoopDB     version 2.60
ProModII: Parameters version 3.5
ProModII: Topologies version 3.5
ProModII: Loading Template: 1QPWC.pdb
ProModII: Loading Template: 1QPWA.pdb
ProModII: Loading Template: 2DHBA.pdb
ProModII: Loading Template: 2MHBA.pdb
ProModII: Loading Template: 2PGHA.pdb
ProModII: Loading Raw Sequence
ProModII: Iterative Template Fitting
ProModII: Iterative Template Fitting
ProModII: Iterative Template Fitting
ProModII: Iterative Template Fitting
ProModII: Generating Structural Alignment
ProModII: Aligning Raw Sequence
ProModII: Refining Raw Sequence Alignment
ProModII: adding blocking groups
ProModII: Weighting Backbones
ProModII: Src residue is not amino-acid
ProModII: Src residue is not amino-acid
ProModII: Src residue is not amino-acid
ProModII: Averaging Sidechains
ProModII: Adding Missing Sidechains
ProModII: Optimizing Sidechains
ProModII: Dumping Preliminary Model
ProModII: Adding Hydrogens
ProModII: Optimizing loops and OXT (nb = 1)
ProModII: Final Total Energy:       -4690.205 KJ/mol
ProModII: Removing Hydrogens
ProModII: Fixing Atom Nomenclature
ProModII: Dumping Sequence Alignment