| Topic |
Web Site Link |
Description |
Author of Web Site |
| Search |
Protein Data Bank |
The single international repository of 3D macromolecular
structure data |
| Brookhaven Gopher server |
Searches current preliminary,
and on hold entries at
Brookhaven |
| Entrez
3D |
Searches the Entrez Database |
NCBI |
| Molecules R Us |
Graphically displays molecular structures (an appropriate client-side viewer
is required). |
P. FitzGerald, CIT, NIH |
| NRL_3D
database |
Provides a searchable link between PDB entries, PIR sequences, and
literature references. |
Pittsburgh Supercomputing Center, Carnegie Mellon Univ. |
| NIH Gopher
server |
Searches the PDB at NIH (see instructions). |
| ProLink database |
Protein structure, sequence homolog, and functional pattern information. |
Kathleen Klose and Temple Smith, BioMolecular Engineering Research
Center, Boston Univ. |
| Browse |
The Annotated Brookhaven
Protein Database |
A WWW version of the "The Annotated Guide to the Brookhaven Protein
Data Bank" |
Shivakumar L. Rajaraman, Beckman Institute, University of Illinois |
| "The
Annotated Guide to the Brookhaven Protein Data Bank" |
A flat list of PDB entries that has been classified according to sequence
similarity and species of origin |
Laura Lynn Walsh, Beckman Institute, University of Illinois |
| CATH (Class-Architecture-Topology-Homology) |
A hierarchical classification of protein structural relationships
derived using a combination of automatic and manual |
C. Orengo, Univ. College London |
| PDB at a Glance |
A classification of the PDB by molecule type, with an interface to
Molecules R Us |
R. Pearlstein, P. FitzGerald, CIT, NIH |
| PDB newsletters |
Brookhaven |
| The
PDB Select List |
A unique list of PDB structures |
U. Hobohm & C. Sander, EMBL, Heildelberg |
| The Protein
Science Kinemage Index |
A collection of PDB structures that can be viewed using the program
MAGE |
Protein Science, Cambridge Univ. Press |
| SCOP |
A classification of the PDB by structure, and provides interfaces
to Molecules R Us, SwissProt 3D Image, and RasMol |
Alexey Murzin, MRC Laboratory of Molecular Biology, Cambridge |
| Symmetry-Generated
Structures |
Complete multimers of proteins with quaternary structure |
Brookhaven |