Metabolic Database

The metabolic component of SoyBase, a soybean genetic database, contains reaction and pathway descriptions and diagrams for a number of basic metabolic pathways. Soybase is an ACEDB database; the metabolic data has been made available on the Web via a translation program that is still under development, and has some bugs.

Credits

Metabolic Data Model: Mary Berlyn, Stan Letovsky, Lisa Lorenzan
Metabolic Diagram Software: Stan Letovsky
Data Acquisition: John Imsande, Marcia Imsande, Tom Cheesebrough
Web Gateway: Guy Decoux
Project Leader: Randy Shoemaker
Superproject: USDA's Plant Genome Project

Pathways

*3-Carbon Family Synthesis
*Acyclic Fatty_Acid_Synthesis
*Alanine Synthesis
*AMP Synthesis
*Arginine Degradation
*Arginine Synthesis
*Aromatic Amino Acids
*Aromatic Amino Acids Family Synthesis
*Asparagine Degradation
*Asparagine Synthesis
*Aspartate Family Synthesis
*Aspartate Synthesis
*Chlorophyll Synthesis
*Common Aromatic
*Cysteine Synthesis
*Fatty Acid Desaturation
*Fatty Acid Synthesis
*Fatty_Acid_Synthesis
*Glutamate Degradation
*Glutamate Family Synthesis
*Glutamate Synthesis
*Glutamine Synthesis
*Glycine Synthesis
*Glyoxylate Cycle
*GMP Synthesis
*Heme Synthesis
*Histidine Synthesis
*IMP Synthesis
*Isoleucine Synthesis
*Leucine Synthesis
*Lipoxygenase Pathway
*Lysine Synthesis
*Methionine Degradation
*Methionine Synthesis
*Nitrogen Reduction
*Phenylalanine Biosynthesis
*Phenylalanine Degradation
*Phenylalanine Synthesis
*Phosphogluconate Pathway
*Plastidyl-glycerol lipid synthesis
*Proline Degradation
*Proline Synthesis
*Pyrimidine Synthesis
*Serine Synthesis
*Soybean Lipid Metabolism
*TCA Cycle
*Threonine Synthesis
*Triglyceride Synthesis
*Tryptophan Biosynthesis
*Tryptophan Synthesis
*Tyrosine Biosynthesis
*Tyrosine Synthesis
*Ureide Degradation
*Ureide Synthesis
*Valine Synthesis
*XMP Synthesis