Query Information

ORIGIN Gram-negative bacterium
BEGIN
>TEST
 LKCNKLVPLF YKTCPAGKNL CYKMFMVATP KVPVKRGCID VCPKSSLLVK
 YVCCNTDRCN 

Result Information

PSORT --- Prediction of Protein Localization Sites
                                            version 6.4(WWW)
TEST          60 Residues
*** Warning: The 1st amino acid is not methionine
Species classification: 2

*** Reasoning Step: 1

Lipop: Examining lipoprotein consensus (Klein et al.:modified)
     Possible modific. site: -1  CRend: 4
McG: Examining signal sequence (McGeoch)
     Length  of  UR:   6
     Peak Value of UR:   0.89
     Net Charge of CR: 2
     Discriminant Score:     -8.83
GvH: Examining signal sequence (von Heijne)
     Signal Score (-7.5): -7.3
     Possible cleavage site: 31
>>> Seems to have no N-terminal signal seq.
Amino Acid Composition of Predicted Mature Form:
   calculated from 1
ALOM: Finding transmembrane regions (Klein et al.)
     count: 0  value:   4.24 threshold:   0.0
     PERIPHERAL  Likelihood =  4.24
    modified ALOM score:  -1.35
Rule: cytoplasmic protein

*** Reasoning Step: 2


----- Final Results -----

              bacterial cytoplasm --- Certainty= 0.273(Affirmative) < succ>
      bacterial periplasmic space --- Certainty= 0.000(Not Clear) < succ>
         bacterial outer membrane --- Certainty= 0.000(Not Clear) < succ>
         bacterial inner membrane --- Certainty= 0.000(Not Clear) < succ>


----- The End -----