homework 5

(1) From the result of NCBI,this toxin is a new one.

(2) Multiple Alignment Form

(3) Garnier plot of newtoxin
            .   10    .   20    .   30    .   40    .   50    .   60
        LKCNKLVPLFYKTCPAGKNICYKMFMVATPKLPVKRGCIDVCPKSSLLVRYVCCNTDKCN
  helix H                         HHHH                              
  sheet     EEEEEEEEE      EEEEEEE           EEEEE    EEEEEEE       
  turns  TTT          TTTTT           T TTTTT     TTTT       TTTTTTT
  coil               C                 C
(4)Charge Distributional Analysis
    LKCNKLVPLF YKTCPAGKNI CYKMFMVATP KLPVKRGCID VCPKSSLLVR YVCCNTDKCN 
    0+00+00000 0+00000+00 00+0000000 +000++000- 000+00000+ 000000-+00
NCSA Computational Biology - SAPS Results