Burgess, Ponuswammy & Sheraga algorithm

Deleage,G. and Roux,B. (1989) "Use of class prediction to improve protein secondary structure prediction: Joint prediction with methods based on sequence homology." Ed. Gerald Fasman. Plenum Press,New York.

based on the method of Garnier, Osguthorpe and Robson (1988). Gibrat et al. (1988)

Levin,J.M. and Garnier,J. (1988) "Improvements in a secondary structure prediction method based on a search for local sequence homologies and its use as a model building tool." Biochim. et Biophys. Acta, 95, 283-195.

Mao,B., Chou,K.-C., and Zhang,C.-T. (1994) "Protein folding classes: a geometric interpretation of the amino acid composition of globular proteins." Protein Engineering, 7, 319-330.

King,R.D. and Sternberg,J.E. (1990) "Machine learning approach for the prediction of protein secondary structure." J. Mol. Biol. 216,441-457.

Chou & Zhang (1992) Eur. J. Biochem., 429-433.
Program Citation:
Georgios Pappas, NCSA Computational Biology.

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....:....x....:....x....:....x....:....x....:....x....:....x
CCCCCEEEEEECCCCCCCCCCEECCCECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC     BPS
CHHHHCEEEEECCCCCCCHEECCCEEECCCCCCCCCCCEEECCCCEEEEEEEEECCCCCC     GAS
HHHCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC     GOR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC     H_K
CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC     Q_S
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC     JOI