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NiceSite View of PROSITE: PS00597

General information about the entry
Entry name PLANT_LTP
Accession number PS00597
Entry type PATTERN
Date DEC-1991 (CREATED); NOV-1997 (DATA UPDATE); JUL-1998 (INFO UPDATE).
PROSITE documentation PDOC00516
Name and characterization of the entry
Description Plant lipid transfer proteins signature.
Pattern [LIVM]-[PA]-x(2)-C-x-[LIVM]-x-[LIVM]-x-[LIVMFY]-x-[LIVM]-[ST]-x(3)- [DN]-C-x(2)-[LIVM].
Numerical results
  • SWISS-PROT release number: 38, total number of sequence entries in that release: 80000.
  • Total number of hits in SWISS-PROT: 39 hits in 39 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 39 hits in 39 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 8 hits in different sequences
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 10 hits in different sequences
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 82.98 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 4,disulfide
  • `Interesting' site in the pattern: 16,disulfide
Cross-references
SWISS-PROT True positive hits: 
NLT1_ARATH (Q42589), NLT1_BRANA (Q42614), NLT1_GOSHI (Q42762), 
NLT1_HORVU (P07597), NLT1_LYCES (P93224), NLT1_ORYSA (P23096), 
NLT1_PRUDU (Q43017), NLT1_PRUPE (P81402), NLT1_SORVU (Q43193), 
NLT1_TOBAC (Q42952), NLT2_BRANA (Q42615), NLT2_GOSHI (Q43129), 
NLT2_LYCES (P27056), NLT2_ORYSA (Q42978), NLT2_SORVU (Q43194), 
NLT2_TOBAC (Q03461), NLT3_BRANA (Q42616), NLT3_ORYSA (Q42999), 
NLT3_PRUDU (Q43019), NLT4_HORVU (Q42842), NLT4_ORYSA (Q42976), 
NLT5_ORYSA (O65091), NLT6_GOSHI (O24418), NLTA_BRAOL (Q42641), 
NLTA_RICCO (P10973), NLTA_WHEAT (P24296), NLTB_BRAOL (Q42642), 
NLTB_RICCO (P10974), NLTC_RICCO (P10975), NLTD_BRAOL (Q43304), 
NLTD_RICCO (Q43119), NLTP_AMACA (P80450), NLTP_BETVU (Q43748), 
NLTP_CICAR (O23758), NLTP_DAUCA (P27631), NLTP_ELECO (P23802), 
NLTP_GERHY (Q39794), NLTP_MAIZE (P19656), NLTP_SPIOL (P10976)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile: 
BLT4_HORVU (P25307), NL12_PARJU (O04404), NL13_PARJU (Q40905), 
NL21_PARJU (P55958), NL22_PARJU (O04403), NLT2_HORVU (P20145), 
NLTP_PINTA (Q41073), NLTP_VIGUN (Q43681)
`Potential' hits (sequences that belong to the set under consideration, but which were not picked up because the region(s) that are used as a 'fingerprint' (pattern or profile) is not yet available in the data bank (partial sequence)): 
NL11_PARJU (P43217), NLT1_PRUAR (P81651), NLT1_VITSX (P80275), 
NLT2_VITSX (P33556), NLT3_VITSX (P80273), NLT4_VITSX (P80274), 
NLTB_WHEAT (P26913), NLTP_PINPI (P26912), NLTP_RAPSA (P29420), 
NLTX_WHEAT (P39085)
PDB 1LIP; 1JTB; 1BE2; 1RZL; 1LPT; 1MZL; 1MZM; 1AFH;
View entry in original PROSITE format
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