Biology WorkBench 3.0

Version 3.0

CLUSTAL_W
Phylogenetic Analysis with Clustalw

Selected Sequence(s)

hw9,
OS HORDEUM VULGARE (BARLEY).,
OS TRITICUM AESTIVUM (WHEAT).,
OS VITIS SP. (GRAPE).,
OS VITIS SP. (GRAPE).,
OS VITIS SP. (GRAPE).,
OS SPINACIA OLERACEA (SPINACH).,
OS LYCOPERSICON ESCULENTUM (TOMATO).,
OS NICOTIANA TABACUM (COMMON TOBACCO).,
OS NICOTIANA TABACUM (COMMON TOBACCO).,
OS LYCOPERSICON ESCULENTUM (TOMATO).

Sequence	Fasta label (*)	Workbench label (**)
1	lipid	hw9,
2	BLT4_HORVU	OS HORDEUM VULGARE (BARLEY).,
3	NLTB_WHEAT	OS TRITICUM AESTIVUM (WHEAT).,
4	NLT4_VITSX	OS VITIS SP. (GRAPE).,
5	NLT2_VITSX	OS VITIS SP. (GRAPE).,
6	NLT1_VITSX	OS VITIS SP. (GRAPE).,
7	NLTP_SPIOL	OS SPINACIA OLERACEA (SPINACH).,
8	NLT1_LYCES	OS LYCOPERSICON ESCULENTUM (TOMATO).,
9	NLT1_TOBAC	OS NICOTIANA TABACUM (COMMON TOBACCO).,
10	NLT2_TOBAC	OS NICOTIANA TABACUM (COMMON TOBACCO).,
11	NLT2_LYCES	OS LYCOPERSICON ESCULENTUM (TOMATO).

(*) Clustalw cuts off Fasta labels after the first space (e.g. ">abc def" becomes ">abc").

(**) The Workbench labels ONLY are meaningful if they were formed correctly, which means each label corresponds with the sequence IN THE SAME order in the sequence alignment. This will not always be the case, so use this column carefully.

PHYLIP rooted tree -Phenogram

Download a PostScript version of the output

PHYLIP unrooted tree

Download a PostScript version of the output

Raw Phylip format tree

(
(
lipid:0.09691,
(
(
NLT1_LYCES:0.06795,
NLT2_TOBAC:0.05485)
:0.02543,
NLT2_LYCES:0.07545)
:0.02151)
:0.01698,
(
(
(
BLT4_HORVU:0.52089,
(
NLT4_VITSX:0.21981,
(
NLT2_VITSX:0.00000,
NLT1_VITSX:0.00000)
:0.18560)
:0.12589)
:0.00745,
NLTB_WHEAT:0.26909)
:0.02816,
NLTP_SPIOL:0.17732)
:0.08287,
NLT1_TOBAC:0.13105);

Citation

Algorithm Citation:

Higgins, D.G., Bleasby, A.J. and Fuchs, R. (1992) CLUSTAL V: improved software for multiple sequence alignment. Computer Applications in the Biosciences (CABIOS), 8(2):189-191.

Thompson J.D., Higgins D.G., Gibson T.J. "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice." Nucleic Acids Res. 22:4673-4680(1994).

Felsenstein, J. 1989. PHYLIP -- Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.
Program Citation:
CLUSTAL W: Julie D. Thompson, Desmond G. Higgins and Toby J. Gibson, modified; any errors are due to the modifications.

PHYLIP: Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle.