CLUSTALW
Multiple Sequence Alignment

Selected Sequence(s)
  • Drosophila melanogaster genomic scaffold 142000013386047 section 5
  • Mus musculus MutL homolog 1 protein (MLH1) mRNA, complete cds.
  • S.cerevisiae chromosome XIII cosmid 8520_
  • Human DNA mismatch repair protein homolog (hMLH1) mRNA, complete
  • Rattus norvegicus mismatch repair protein (MLH1) mRNA, complete

    Clustal W dendrogram



    Rooted tree (generated by Phylip's Drawgram)

    Download a PostScript version of the output



    Phylip-format dendrogram

    (
GENPEPT_1724118:0.04844,
(
GENPEPT_463989:0.05511,
(
GENPEPT_825572:0.37989,
GENPEPT_7304079:0.24210)
:0.19175)
:0.02630,
GENPEPT_7595954:0.03478);

    Clustal W options and diagnostic messages

    Alignment type: Protein                 Alignment order: aligned                

                    Pairwise alignment parameters

Method: accurate                        
Matrix: Gonnet                          
Gap open penalty: 10.00                 Gap extension penalty: 0.10             

                    Multiple alignment parameters

Matrix: Gonnet                          Negative matrix?: no                    
Gap open penalty: 10.00                 Gap extension penalty: 0.20             
% identity for delay: 30                Residue-specific gap penalties: on      
Penalize end gaps: on                   Hydrophilic gap penalties: on           
Gap separation distance: 0              Hydrophilic residues: GPSNDQEKR         




 CLUSTAL W (1.81) Multiple Sequence Alignments



Sequence type explicitly set to Protein
Sequence format is Pearson
Sequence 1: GENPEPT_1724118      757 aa
Sequence 2: GENPEPT_463989       756 aa
Sequence 3: GENPEPT_825572       769 aa
Sequence 4: GENPEPT_7595954      760 aa
Sequence 5: GENPEPT_7304079      664 aa
Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score:  86
Sequences (1:3) Aligned. Score:  36
Sequences (1:4) Aligned. Score:  91
Sequences (1:5) Aligned. Score:  48
Sequences (2:3) Aligned. Score:  36
Sequences (2:4) Aligned. Score:  88
Sequences (2:5) Aligned. Score:  51
Sequences (3:4) Aligned. Score:  36
Sequences (3:5) Aligned. Score:  37
Sequences (4:5) Aligned. Score:  50
Time for pairwise alignment: 1.247176

Guide tree        file created:   [../tmp-dir/744.CLUSTALW.dnd]
Start of Multiple Alignment
There are 4 groups
Aligning...
Group 1: Sequences:   2      Score:15727
Group 2: Sequences:   3      Score:15398
Group 3: Sequences:   4      Score:10965
Group 4: Sequences:   5      Score:10168
Time for multiple alignment: 2.808026

Alignment Score 24568
CLUSTAL-Alignment file created  [../tmp-dir/744.CLUSTALW.aln]