STDIN MSF: 7359 Type: P Mon Jan 12 01:21:45 2004 Check: 0000 .. Name: Bovine_respirat Len: 7094 Check: 0000 Weight: 1.00 Name: Bovine_enteric_ Len: 7094 Check: 0000 Weight: 1.00 Name: Bovine_CoV Len: 7059 Check: 0000 Weight: 1.00 Name: Murine_HepV Len: 7180 Check: 0000 Weight: 1.00 Name: SARS_CoV Len: 7073 Check: 0000 Weight: 1.00 Name: Human_CoV Len: 6758 Check: 0000 Weight: 1.00 Name: Porcine_epidemi Len: 6781 Check: 0000 Weight: 1.00 Name: Porcine_transmi Len: 6684 Check: 0000 Weight: 1.00 Name: Feline_infectio Len: 322 Check: 0000 Weight: 1.00 // Bovine_respirat MSKINKYGLE LHWAPEFPWM FEDAEEKLDN PSSSEVDIVC STTAQKLETG Bovine_enteric_ MSKINKYGLE LHWAPEFPWM FEDAEEKLDN PSSSEVDIVC STTAQKLETG Bovine_CoV MSKINKYGLE LHWAPEFPWM FEDAEEKLDN PSSSEVDIVC STTAQKLETG Murine_HepV MAKMGKYGLG FKWAPEFPWM LPNASEKLGN PERSEEDGFC PSAAQEPKVK SARS_CoV ---------- --MESLVLGV NEKTHVQLSL PVLQVRDVLV RGFGDSVEEA Human_CoV ---------- ---------M ACNRVTLAVA SDSEISANGC STIAQAVRRY Porcine_epidemi ---------- ---------M ASNHVTLAFA NDAEISAFGF CTASEAVSYY Porcine_transmi ---------- ---------M SSKQFKILVN EDYQVNVP-S LPIRDVLQEI Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GICPENHVMV DCRRLLKQEC CVQSSLIREI VMNTRPYDLE VLLQDALQSR Bovine_enteric_ GICPENHVMV DCRRLLKQEC CVQSSLIREI VMNTRPYDLE VLLQDALQSR Bovine_CoV GICPENHVMV DCRRLLKQEC CVQSSLIREI VMNTRPYDLE VLLQDALQSR Murine_HepV GKTLVNHVRV DCSRLPALEC CVQSAIIRDI FVDEDPQKVE ASTMMALQFG SARS_CoV LSEAREHLKN GTCGLVELEK GVLPQLEQPY VFIKRSD--A LSTNHGHKVV Human_CoV SEAASNGFRA CRFVSLDLQD CIVGIADDTY VMGLHG---- ---------- Porcine_epidemi SEAAASGFMQ CRFVSLDLAD TVEGLLPEDY VMVVIG---- ---------- Porcine_transmi KYCYRNGFEG YVFVPEYCRD LVDCDRKDHY VIGVLG---- ---------- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat EAVLVTPPLG MSLEACYVRG CNPNGWTMGL FRRRSVCNTG RCAVNKHVAY Bovine_enteric_ EAVLVTPPLG MSLEACYVRG CNPNGWTMGL FRRRSVCNTG RCAVNKHVAY Bovine_CoV EAVLVTPPLG MSLEACYVRG CNPNGWTMGL FRRRSVCNTG RCAVNKHVAY Murine_HepV SAVLVKPSKR LSVQAWAKLG VLPKTPAMGL FKRFCLCNTR ECVCDAHVAF SARS_CoV ELVAEMDGIQ YGRSGITLGV LVPHVGETPI AYRNVLLRK- --NGNKGAGG Human_CoV NQTLFCNIMK FSDRPFMLHG WLVFSNSNYL LEEFDVVFGK RGGGNVTYTD Porcine_epidemi TTKLSAYVDT FGSRPRNICG WLLFSNCNYF LEELELTFGR RGG-NIVPVD Porcine_transmi NGVSDLKPVL LTEPSVMLQG FIVRANCNGV LEDFDLKIAR TGR-GAIYVD Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat QLYMIDPAGV CFGAGQFVGW VIPLAFMPVQ SRKFIVPWVM YLRKCGEKGA Bovine_enteric_ QLYMIDPAGV CFGAGQFVGW VIPLAFMPVQ SRKFIVPWVM YLRKCGEKGA Bovine_CoV QLYMIDPAGV CFGAGQFVGW VIPLAFMPVQ SRKFIAPWVM YLRKCGEKGA Murine_HepV QLFTVQPDGV CLGNGRFIGW FVPVTAIPEY AKQWLQPWSI LLRKGGNKGS SARS_CoV HSYGIDLKSY DLG--DELGT DPIEDYEQNW NTKHGSGALR ELTRELNGGA Human_CoV QYLCGADGKP VM---SEDLW QFVDHFGENE E--IIINGHT YVCAWLTKRK Porcine_epidemi QYMCGADGKP VL---QESEW EYTDFFADSE DGQLNIAGIT YVKAWIVERS Porcine_transmi QYMCGADGKP VI---EG--- DFKDYFGDED --IIEFEGEE YHCAWTTVRD Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat YNKDHKRGGF EH-VYNFKVE DAYDLVHDEP KGKFSKKAYA LIRGYRGVKP Bovine_enteric_ YNKDHKRGGF EH-VYNFKVE DAYDLVHDEP KGKFSKKAYA LIRGYRGVKP Bovine_CoV YIKDYKRGGF EH-VYNFKVE DAYDLVHDEP KGKFSKKAYA LIRGYRGVKP Murine_HepV VTSGHFRRAV TMPVYDFNVE DACEEVHLNP RGKYSCKAYA LLRGYRGVKP SARS_CoV VTRYVDNNFC GPDGYPLDCI KDFLARAGKS MCTLS-EQLD YIESKRGVYC Human_CoV PLDYKRQNNL AIEEIEYVHG DALHTLRNGS VLEMAKEVKT SSKVVLSDAL Porcine_epidemi DVSYASQNLT SIKSITYCS- TYEHTFLDGT AMKVARTPKI KKNVVLSEPL Porcine_transmi EKPLNQQTLF TIQEIQYNL- DIPHKLPNCA TRHVAPPVKK NSKIVLSEDY Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LLYVDQYGCD YTGGLADGLE AYADKTLQEM KALFPIWSQE LPFDVTVAWH Bovine_enteric_ LLYVDQYGCD YTGGLADGLE AYADKTLQEM KALFPIWSQE LPFDVTVAWH Bovine_CoV LLYVDQYGCD YTGGLADGLE AYADKTLQEM KALFPIWSQE LPFDVTVAWH Murine_HepV ILFVDQYGCD YTGCLAKGLE DYGDLTLSEM KELSPVWRDS LDNEVVVAWH SARS_CoV CRDHEHEIAW FTERSDKSYE HQTPFEIKSA KKFDTFKGEC PKFVFPLNSK Human_CoV DKLYKVFGSP VMTNGSNILE AFTKPVFISA LVQCTCGTKS WSVGDWTGFK Porcine_epidemi ATIYREIGSP FVDNGSDARS IIRRPVFLHA FVKCKCGSYH WTVGDWTSYV Porcine_transmi KKLYDIFGSP FMGNGDCLSK CFDTLHFIAA TLRCPCGSES SGVGDWTGFK Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VVRDPRYVMR LQSASTIRSV AYVANPTEDL CDGSVVIKEP VHVYADDSII Bovine_enteric_ VVRDPRYVMR LQSASTIRSV AYVANPTEDL CDGSVVIKEP VHVYADDSII Bovine_CoV VVRDPRYVMR LQSASTIRSV AYVANPTEDL CDGSVVIKEP VHVYADDSII Murine_HepV VDRDPRAVMR LQTLATVRSI EYVGQPIEDM VDGDVVMREP AHLLAPNAIV SARS_CoV VKVIQPRVEK KKTEGFMGRI RSVYPVASPQ ECNNMHLSTL MKCNHCDEVS Human_CoV SSCCNVISNK LCVVPGNVKP GDAVITTQQA GAGIKYFCGM TLKFVANIEG Porcine_epidemi STCCGFKCKP VLVASCSAMP GSVVVTRAGA GTGVKYYNNM FLRHVADIDG Porcine_transmi TACCGLSGKV KGVTLGDIKP GDAVVTSMSA GKGVKFFANC VLQYAGDVEG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LRQHNLVDIM SCFYMEADAV VNAFYGVDLK DCGFVMQFGY IDCEQDLCDF Bovine_enteric_ LRQHNLVDIM SCFYMEADAV VNAFYGVDLK DCGFVMQFGY IDCEQDLCDF Bovine_CoV LRQHNLVDIM SCFYMEADAV VNAFYGVDLK DCGFVMQFGY IDCEQDLCDF Murine_HepV KRLPRLVETM ---LYTDSSV TEFCYKTKLC DCGFITQFGY VDCCGDTCGF SARS_CoV WQTCDFLKAT CEHCGTENLV IEGPTTCGYL PTNAVVKMPC PACQDPEIGP Human_CoV VSVWRVIALQ SVDCFVASST FVEEEHVNRM DTFCFNVRNS VTDECRLAML Porcine_epidemi LAFWRILKVQ SKDDLACSGK FLEHHEEGFT DPCYFLNDSS LATKLKFDIL Porcine_transmi VSIWKVIKTF TVDETVCTPG FEGELND--- -FIKPESKSL VACSVKRAFI Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KGWVPGNMID G---FACTTC GHVYETGDLL AQSSGVLPVN PVLHTKSAAG Bovine_enteric_ KGWVPGNMID G---FACTTC GHVYETGDLL AQSSGVLPVN PVLHTKSAAG Bovine_CoV KGWVPGNMID G---FACTTC GHVYETGDLL AQSSGVLPVN PVLHTKSAAG Murine_HepV RGWVPGNMMD G---FPCPGC CKSYMPWELE AQSSGVIPEG GVLFTQSTDT SARS_CoV EHSVADYHNH SNIETRLRKG GRTRCFGGCV FAYVGCYNKR AYWVPRASAD Human_CoV GAEMTSNVRR Q------VAS GVIDISTGWF DVYDDIFAES KPWFVRKAED Porcine_epidemi SGKFSDEVKQ A------IIA GHVVVGSALV DIVDDALG-- QPWFIRKLGD Porcine_transmi TGDIDDAVHD C------IIT GKLDLSTNLF GNVGLLFKK- TPWFVQKCGA Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat YGGFGCKDSF TLYGQTVVYF GGCVYWSPAR NIWIPILKSS VKSYDGLVYT Bovine_enteric_ YGGFGCKDSF TLYGQTVVYF GGCVYWSPAR NIWIPILKSS VKSYDGLVYT Bovine_CoV YGGFGCKDSF TLYGQTVVYF GGCVYWSPAR NIWIPILKSS VKSYDGLVYT Murine_HepV VN----RESF KLYGHAVVPF GGAAYWSPYP GMWLPVIWSS VKSYSYLTYT SARS_CoV IG----SGHT GITGDNVETL NEDLLEILSR ---ERVNINI VGDFHLNEEV Human_CoV IFGPCWSALA SALKQLKVTT GELVRFVKSI CNSAVAVVG- -GTIQILASV Porcine_epidemi LASAPWEQLK AVVRGLGLLS DEVVLFGKRL SCATLSIVN- -GVFEFLADV Porcine_transmi LFVDAWKVVE ELCGSLTLTY KQIYEVVASL CTSAFTIVNY KPTFVVPDNR Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GVVGCKAIVK ETNLICKALY LDYVQHKCGN LHQRELLGVS DVWHKQLLLN Bovine_enteric_ GVVGCKAIVK ETNLICKALY LDYVQHKCGN LHQRELLGVS DVWHKQLLLN Bovine_CoV GVVGCKAIVK ETNLICKALY LDYVQHKCGN LHQRELLGVS DVWHKQLLLN Murine_HepV GVVGCKAIVQ ETDAICRFLY MDYVQHKCGN LEQRAILGLD DVYHRQLLVN SARS_CoV AIILASFSAS TSAFIDTIKS LDYKSFKT-I VESCGNYKVT KGKPVKGAWN Human_CoV PEKFLNAFDV FVTAIQTVFD CAVETCTIAG KAFDKVFDYV LLDNALVKLV Porcine_epidemi PEKLAAAVTV FVNFLNEFFE SACDCLKVGG KTFNKVGSYV LFDNALVKLV Porcine_transmi VKDLVDKCVK VLVKAFDVFT QIITIAGIEA KCFVLGAKYL LFNNALVKLV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat RGVYKPLLEN IDYFNMRRAK FSLETFT--- VCADGFMPFL LDDLVPRAYY Bovine_enteric_ RGVYKPLLEN IDYFNMRRAK FSLETFT--- VCADGFMPFL LDDLVPRAYY Bovine_CoV RGVYKPLLEN IDYFNMRRAK FSLETFT--- VCADGFMPFL LDDLVPRAYY Murine_HepV RGDYSLLLEN VDLFVKRRAE FACK-FA--- TCGDGLVPLL LDGLVPRSYY SARS_CoV IGQQRSVLTP LCGFPSQAAG VIRSIFARTL DAANHSIPDL QRAAVTILDG Human_CoV TTKLKGVRER GLNKVKYATV VVGSTEEVKS SRVERSTAVL TIANNYSKLF Porcine_epidemi KAKARGPRQA GICEVRYTSL VVGSTTKVVS KRVENANVNL VVVDEDVTLN Porcine_transmi SVKILGKKQK GLECAFFATS LVGATVNVTP KRTETATISL NKVDD-VVAP Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LAVSGQAFCD YADKICHAVV SKSKELLDVS LDSLSAAIHY LN-SKIVDLA Bovine_enteric_ LAVSGQAFCD YADKICHAVV SKSKELLDVS LDSLSAAIHY LN-SKIVDLA Bovine_CoV LAVSGQAFCD YAGKICHAVV SKSKELLDVS VDSLGAAIHY LN-SKIVDLA Murine_HepV LIKSGQAFTS LMVNFSREVV DMCMDMALLF MHDVKVATKY VK-KVTGKVA SARS_CoV ISEQSLRLVD AMVYTSDLLT NSVIIMAYVT GGLVQQTSQW LS-NLLGTTV Human_CoV DEGYTVVIGD VAYFVSDGYF RLMASPNSVL TTAVYKPLFA FNVNVMGTRP Porcine_epidemi TTGRTVVVDG LAFFESDGFY RHLADADVVI EHPVYKSACE LKPVFECDPI Porcine_transmi GEGYIVIVGD MAFYKSGEYY FMMSSPNFVL TNNVFKAVKV PSYDIVYDVD Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat QHFSDFGTSF VSKIVHFFKT FTTSTALAFA WVLFHVLHGA YIVVESDIYF Bovine_enteric_ QHFSDFGTSF VSKIVHFFKT FTTSTALAFA WVLFHVLHGA YIVVESDIYF Bovine_CoV QHFSDFGTSF VSKIVHFFKT FTTSTALAFA WVLFHVLHGA YIVVESDIYF Murine_HepV VRFKALGIAV VRKITEWFDL AVDTAASAAG WLCYQLVNGL FAVANGVITF SARS_CoV EKLRPIFEWI EAKLSAGVEF LKD-----AW EILKFLITGV FDIVKGQIQV Human_CoV EKFPTTVTCE NLESAVL--F VNDKITEFQL DYSIDVIDNE IIVKPNISLC Porcine_epidemi PDFPLPVAAS VAELCVQTDL LLKNYNTPYK TYSCVVRGDK CCITCTLQFK Porcine_transmi NDTKSKMIAK LGSSFEYDGD IDAAIVKVNE LLIEFRQQSL CFRAFKDDKS Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VKN-IPRYAS AVAQAFRSVA KVVLDSLRVT FIDGLSCFKI GRRRICLSGS Bovine_enteric_ VKN-IPRYAS AVAQAFRSVA KVVLDSLRVT FIDGLSCFKI GRRRICLSGS Bovine_CoV GKN-IPRYAS AVAQAFRSGA KVGLDSLRVT FIDGLSCFKI GRRRICLSGS Murine_HepV IQE-VPELVK NFVDKFKTFF KVLIDSMSVS ILSGLTVVKT ASNRVCLAGS SARS_CoV ASDNIKDCVK CFIDVVNKAL EMCIDQVTIA GAK-LRSLNL GEVFIAQSKG Human_CoV VPLYVRDYVD KWDDFCRQYS NESWFEDDYR AFISVLDITD AAVKAAESKA Porcine_epidemi APSYVEDAVN -FVDLCTKNI GTAGFHEFYI TAHEQQDLQG FLTTCCTMSG Porcine_transmi IFVEAYFKKY KMPACLAKHI GLWNIIKKDS CKRGFLNLFN HLNELEDIKE Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KIYEVERG-L LHSSQLPLDV YDLTMPSQVQ KAKQKPIYLK GSGSDFSLAD Bovine_enteric_ KIYEVERG-L LHSSQLPLDV YDLTMPSQVQ KAKQKPIYLK GSGSDFSLAD Bovine_CoV KIYEVERG-L LHSSQLPLDV YDLTMPSQVQ KTKQKGIYLK GSGSDFSLAD Murine_HepV KVYEVVQK-S LPAYIMPVGC SEATC----- --------LV GEIEPAVFED SARS_CoV LYRQCIRGKE QLQLLMPLKA PKEVT----- -------FLE GDSHDTVLTS Human_CoV FVDTI--VPP CPSILKVIDG GKIWN----- ---------- GVIKNVNSVR Porcine_epidemi FECFMPTIPQ CPAVLEEIDG GSIWR----- ---------- SFITGLNTMW Porcine_transmi TNIQAIKNIL CPDPLLDLDY GAIWY----- ---------- NCMPGCSDPS Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat SVVEVVTTSL TPCG-----Y SEPPKVADKI CIVDNVYMAK AGDKYYPVVV Bovine_enteric_ SVVEVVTTSL TPCG-----Y SEPPKVADKI CIVDNVYMAK AGDKYYPVVV Bovine_CoV SVVEVVTTSL TPCG-----Y SEPPKVADKI CIVDNVYMAK AGDKYYPVVV Murine_HepV DVVDVVKAPL TYQG-----C CKPPSSFEKI CIVDKLYMAK CGDQFYPVVV SARS_CoV EEVVLKNGEL EALETPVDSF TNGAIVGTPV CVNGLMLLEI KDKEQYCALS Human_CoV DWLKSLKLNL TQQG------ --LLGTCAKR FKRWLGILLE AYNAFLDTVV Porcine_epidemi DFCKRLKVSF GLDG------ --IVVTVARK FKRLGALLAE MYNTYLSTVV Porcine_transmi VLGS---VQL LIGN------ --GVKVVCDG CKGFANQLSK GYNKLCNAAR Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DG-HVGLLDQ AWRVPCAG-- RRVTFKEQPT VNEIASTPKT IKVFYELDKD Bovine_enteric_ DG-HVGLLDQ AWRVPCAG-- RRVTFKEQPT VNEIASTPKT IKVFYELDKD Bovine_CoV DG-HVGLLDQ AWRVPCAG-- RCVTFKEQPT VNEIASTPKT IKVFYELDKD Murine_HepV DNDTVGVLDQ CWRFPCAG-- KKVVFNDKPK VKEVPST-RK IKIIFALDAT SARS_CoV PG--LLATNN VFRLKGGAPI KGVTFG-EDT VWEVQG-YKN VRITFELDER Human_CoV ST-------- --VKIGGLTF KTYAFDKPYI VIRDIVCKVE NKTEAEWIEL Porcine_epidemi EN-------- --LVLAGVSF KYYATSVPKI VLG--GCFHS VKSVFASVFQ Porcine_transmi ND-------- --IEIGGIPF STFKTPTNTF IEMTDAIYSV IEQGKALSFR Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat FNTILNTACG VFEVDDTVDM EEFYAVVVDA IEEKLSPCKE LEGVGAKVSA Bovine_enteric_ FNTILNTACG VFEVDDTVDM EEFYAVVIDA IEEKLSPCKE LEGVGAKVSA Bovine_CoV FNTILNTACG EFEVDDTVDM EEFYAVVIDA IEEKLSPCKE LEGVGAKVSA Murine_HepV FDSVLSKACS EFEVDKDVTL DELLDVVLDA VESTLSPCKE HGVIGTKVCA SARS_CoV VDKVLNEKCS VYTVESGTEV TEFACVVAEA VVKTLQPVSD LLTN---MGI Human_CoV FPHNDRIKSF STFESAYMPI ADPTHFDIEE VELLDAEFVE PGCGGILAVI Porcine_epidemi IPVQAGIEKF KVFLNCVHPV VP-RVIETSF VELEETTFKP PALNGGIAIV Porcine_transmi DADVPVVDNG TISTADWS-- --------EP ILLEPAEYVK PKNNGNVIVI Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat FLQKLEDNSL FLFDEAGEEV LASKLYCAFT APEDD----- ---------- Bovine_enteric_ FLQKLEDNSL FLFDEAGEEV LASKLYCAFT APEDD----- ---------- Bovine_CoV FLQKLEDNSL FLFDEAGEEV LAPKLYCAFT APEDD----- ---------- Murine_HepV LLERLVDDYV YLFDEGGEEV IASRMYCSFS APDEDCVATD VVYADENQDD SARS_CoV DLDEWSVATF YLFDDAGEEN FSSRMYCSFY PPDEE----- ---------- Human_CoV DEHVFYKK-D GVYYPSNGTN ILPVAFTKAA GGK------- ---------- Porcine_epidemi DGFAFYYD-G TLYYPTDGNS VVPICFKKKG GGD------- ---------- Porcine_transmi AGYTFYKDED EHFYPYGFGK IVQRMYNKMG GGDKT----- ---------- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ---------- DFLEESGVEE DDVEGEETDL TVTSAG---- -EPCVASEQ- Bovine_enteric_ ---------- DFLEESGVEE DDVEGEETDL TVTSAG---- -EPCVASEQ- Bovine_CoV ---------- DFLEESGVEE DDVEGEETDL TVTSAG---- -EPCVASEQ- Murine_HepV DADDPVVLVA DTQEEDGVAR EQVDSADSEI CVAHTGGQEM TEPDVVGSQT SARS_CoV ---------- EEDDAECEEE EIDETCEHEY GTEDDYQGLP LEFGASAET- Human_CoV ---------- ----VSFSDD VEVKDIEPVY RVKLCF---- ---------- Porcine_epidemi ---------- ----VKFSDE VSVKTIDPVY KVSLEF---- ---------- Porcine_transmi ---------- ----VSFSEE VDVQEIAPVT RVKLEF---- ---------- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ---------- ---------- EESSEILEDT LDDGP-CVET S-DSQVEEDV Bovine_enteric_ ---------- ---------- EESSEILEDT LDDGP-CVET S-DSQVEEDV Bovine_CoV ---------- ---------- EESSEILEDT LDDGP-CVET S-DSQVEEDV Murine_HepV PIASAEETEV GEACDREGIA EVKATVCADA LDACPDQVEA F-DIEKVEDS SARS_CoV ---------- ---------V RVEEEEEEDW LDDTTEQSEI EPEPEPTPEE Human_CoV ---------- ---------- EFEDEKLVDV CEKAIG---- --KKIKHEG- Porcine_epidemi ---------- ---------- EFESETIMAV LNKAVG---- --NRIKVTG- Porcine_transmi ---------- ---------- EFDNEIVTGV LERAIG---- --TRYKFTGT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat EMSDFADLES VIQD------ ------YENV CFEFYTT--E PEFVKVLDLY Bovine_enteric_ EMSDFADLES VIQD------ ------YENV CFEFYTT--E PEFVKVLDLY Bovine_CoV QMSDFGDLES VIQD------ ------YENV CFEFYTT--E PEFVKVLDLY Murine_HepV ILSELQTELN APADKTYEDV LAFDAIYSET LSAFYAVPSD ETHFKVCGFY SARS_CoV PVNQFTGYLK LTDN------ ------VAIK CVDIVKEAQS ANPMVIVNAA Human_CoV DWDSFCKTIQ SALS------ ---------- ---VVS---- -CYVNLPTYY Porcine_epidemi GWDDVVEYIN VAIE------ ---------- ---VLK---- -DHVEVPKYY Porcine_transmi TWEEFEESIS EELD------ ---------- ---AIFDTLA NQGVELEGYF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VPKATRNNCW LRSVLAVMQK LPCQFKDKNL QDLWVLYKQQ YSQLFVDTLV Bovine_enteric_ VPKATRNNCW LRSVLAVMQK LPCQFKDKNL QDLWVLYKQQ YSQLFVDTLV Bovine_CoV VPKATRNNCW LRSVLAVMQK LPCQFKDKNL QDLWVLYKQQ YSQLFVDTLV Murine_HepV SPAIERTNCW LRSTLIVMQS LPLEFKDLGM QKLWLSYKAG YDQCFVDKLV SARS_CoV NIHLKHG-GG VAGALNKATN GAMQKESDDY IKLNGPLTVG GSCLLSGHNL Human_CoV IYDEEGGNDL SLP--VMISE WPLS------ ---------- ----VQQAQQ Porcine_epidemi IYDEEGGTDP NLP--VMVSQ WPLNDDTISQ DLLDVEVVTD APIDSEGDEV Porcine_transmi IYDTCGGFDI KNPDGIMISQ YDIN------ --ITADEKSE VSASSEEEEV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat NKIPANIVVP QGGYVADFAY WFLTLCDWQC VAYWKC-IKC DLALKLKGLD Bovine_enteric_ NKIPANIVVP QGGYVADFAY WFLTLCDWQC VAYWKC-IKC DLALKLKGLD Bovine_CoV NKIPANIVVP QGGYVADFAY WFLTLCDWQC VAYWKC-IKC DLALKLKGLD Murine_HepV KSAPKSIILP QGGYVADFAY FFLSQCSFKV HANWRC-LKC GMELKLQGLD SARS_CoV AKKCLHVVGP NLNAGEDIQL LKAAYENFNS QDILLAPLLS AGIFGAKPLQ Human_CoV EATLPDIAED VVD------- ---------- ---------- ----QVEEVN Porcine_epidemi DSSAPEKVAD VANSEPGDDG LPVAPETNVE S--------- ----EVEEVA Porcine_transmi ESVEEDPENE IVEASEGAEG -TSSQEEVET V--------- ----EVADIT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat AMFFYGDVVS HVCKCGESMV LIDVDVPFTA HFALKDKLFC AFITKRSVYK Bovine_enteric_ AMFFYGDVVS HVCKCGESMV LIDVDVPFTA HFALKDKLFC AFITKRSVYK Bovine_CoV AMFFYGDVVS HVCKCGESMV LIDVDVPFTA HFALKDKLFC AFITKRSVYK Murine_HepV AVFFYGDVVS HMCKCGNSMT LLSADIPYTF DFGVRDDKFC AFYTPRKVFR SARS_CoV SLQVCVQTVR TQVYIAVNDK ALYEQVVMDY LDNLKPRVEA PKQEEPPNTE Human_CoV SIFD-IETVD VKHDVSPFEM P--------- --------FE ELNGLKILKQ Porcine_epidemi ATLSFIKDTP STVTKDPFAF D--------- --------FV SYGGLKVLRQ Porcine_transmi STEEDVDIVE VSAKDDPWAA AVDVQEAEQF NPSLPPFKTT NLNGKIILKQ Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat AACVVDVNDS HSMAVVDGKQ IDDHRVTSIT SDKFDFIIGH GMSFSMTTFE Bovine_enteric_ AACVVDVNDS HSMAVVDGKQ IDDHRVTSIT SDKFDFIIGH GMSFSMTTFE Bovine_CoV AACVVDVNDS HSMAVVDGKQ IDDHRITSIT SDKFDFIIGH GTSFSMTTFE Murine_HepV AACAVDVNDC HSMAVVDGKQ IDGKVVTKFN GDKFDFMVGH GMTFSMSPFE SARS_CoV DSKTEEKSVV QKPVDVKPKI KACIDEVTTT LEETKFLTNK LLLFADINGK Human_CoV LDNNCWVNSV MLQIQLTGIL DGDYAMQFFK MGRVAKMIER CYTAEQCIRG Porcine_epidemi SHNNCWVTST LVQLQLLGIV D-DPAMELFS AGRVGPMVRK CYESQKAILG Porcine_transmi GDNNCWINAC CYQLQAFDFF N-NEAWEKFK KGDVMDFVNL CYAATTLARG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat IAQLYGSCIT P-NVCFVKGD IIKVSKRVKA EVVVNPANGH MAHGGGVAKA Bovine_enteric_ IAQLYGSCIT P-NVCFVKGD IIKVSKRVKA EVVVNPANGH MAHGGGVAKA Bovine_CoV IAQLYGSCIT P-NVCFVKGD IIKVSKRVKA EVVVNPANGH MAHGGGVAKA Murine_HepV IAQLYGSCIT P-NVCFVKGD VIKVLRRVGA EVIVNPANGR MAHGAGVAGA SARS_CoV LYHDSQNMLR GEDMSFLEKD APYMVGDVIT SGDITCVVIP SKKAGGTTEM Human_CoV AMGDVGLCMY RLLKDLHTGF MVMDYKCSCT SGRLEESGAV LFCTPTKKAF Porcine_epidemi SLGDVSACLE SLTKDLHTLK ITCSVVCGCG TGERIYEGCA FRMTPTLEPF Porcine_transmi HSGDAEYLLE LMLNDYSTAK IVLAAKCGCG EKEIVLERAV FKLTPLKESF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat IAVAAGQQFV KETTDMVKSK GVCATGDCYV STGGKLCKTV LNVVGPDART Bovine_enteric_ IAVAAGQQFV KETTDMVKSK GVCATGDCYV STGGKLCKTV LNVVGPDART Bovine_CoV IAVAAGQQFV KETTDMVKSK GVCATGDCYV STGGKLCKTV LNVVGPDART Murine_HepV IAKAAGKAFI NETADMVKAQ GVCQVGGCYE STGGKLCKKV LNIVGPDARG SARS_CoV LSRALKKVPV DEYITTYPGQ GCAGYTLEEA KTALKKCKSA FYVLPSEAPN Human_CoV PYGTCLNCNA PRMCTIRQLQ GTIIFVQQKP EPVNPVS-FV VKPVCSSIFR Porcine_epidemi PYGACAQCAQ VLMHTFKSIV GTGIFCR-DT TALSLDS-LV VKPLCAAAFI Porcine_transmi NYGVCGDCMQ VNTCRFLSVE GSGVFVHDIL SKQTPEAMFV VKPVMHAVYT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat QGKQSYALLE RVYKHLNKYD CVVTTLISAG IFSVPSDVSL TYLLGTAEKQ Bovine_enteric_ QGKQSYALLE RVYKHLNKYD CVVTTLISAG IFSVPSDVSL TYLLGTAEKQ Bovine_CoV QGKQSYALLE RVYKHLNKYD CVVTTLISAG IFSVPSDVSL TYLLGTAKKQ Murine_HepV HGNECYSLLE RAYQHINKCD NVVTTLISAG IFSVPTDVSL TYLLGVVTKN SARS_CoV AKEEILGTVS WNLREMLAHA EETRKLMPIC MDVRAIMATI QRKYKGIKIQ Human_CoV GAVSCGHYQT NIYSQNLCVD GFGVNKIQPW TNDALNTICI KDADYNAKVE Porcine_epidemi GKDS-GHYVT NFYDAAMAID GYGRHQIK-- -YDTLNTICV KDVNW----- Porcine_transmi GTTQNGHYMV DDIEHGYCVD GMGIKPLKKR CYTSTLFINA NVMTRAEKPK Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VVLVSNNQED FDLISKCQIT AVEG-TKKLA ERLSFN---- --VGRSIVYE Bovine_enteric_ VVLVSNNQED FDLISKCQIT AVEG-TKKLA ERLSFN---- --VGRSIVYE Bovine_CoV VVLVSNNQED FDLISKCQIT AVEG-TKKLA ERLSFN---- --VGRSIVYE Murine_HepV VILVSNNQDD FDVIEKCQVT SVAG-TKALS FQLAKN---- --LCRDVKFV SARS_CoV EGIVDYGVRF FFYTSKEPVA SIITKLNSLN EPLVTMPIGY VTHGFNLEEA Human_CoV ISV------- ----TPIKNT VDTTPKEEFV VKEKLN---- --AFLVHDNV Porcine_epidemi ---------- ---------T APLVPAVDSV VEPVVK---- --PFYSYKNV Porcine_transmi QEFKVEKVEQ QPIVEENKSS IEKEEIQSPK NDDLIL---- --PFYKAGKL Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat TDANKLILSN DVAFVSTFNV LQDVLSLRHD IALDDDARTF VQSNVDVVPE Bovine_enteric_ TDANKLILSN DVAFVSTFNV LQDVLSLRHD IALDDDARTF VQSNVDVVPE Bovine_CoV TDANKLILSN DVAFVSTFNV LQDVLSLRHD IALDDDARTF VQSNVDVVPE Murine_HepV TNACSSLFS- ESSFVSSYDV LQEVEALRHD IQLDDDARVF VQANMDCLPT SARS_CoV ARCMRSLKAP AVVSVSSPDA VTTYNGYLTS SSKTSEEHFV ETVSLAGSYR Human_CoV AFYQGDVDTV VNGVDFDFIV NAANENLAHG GGLAKALDVY TKGKLQRLSK Porcine_epidemi DFYQGDFSDL VK-LPCDFVV NAANEKLSHG GGIAKAIDVY TKGMLQKCSN Porcine_transmi SFYQGALDVL INFLEPDVIV NAANGDLKHM GGVARAIDVF TGGKLTERSK Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GWRVVNKFYQ INGVRTVKYF ECPGGIDICS QDKVFGYVQQ GSFNKATVAQ Bovine_enteric_ GWRVVNKFYQ INGVRTVKYF ECPGGIDICS QDKVFGYVQQ GSFNKATVAQ Bovine_CoV GWRVVNKFYQ INGVRPVKYF ECPGGIDICS QDKVFGYVQQ GSFNKATVAQ Murine_HepV DWRLVNKFDS VDGVRTIKYF ECPGEVFVSS QGKKFGYVQN GSFKEASVSQ SARS_CoV DWSYSGQRTE LG----VEFL KRGDKIVYHT LESPVEFHLD G--EVLSLDK Human_CoV EHIGLAGKVK VGTGVMVECD S--LRIFNVV GPRKG-KHER DLLIKAYNTI Porcine_epidemi DYIKAHGPIK VGRGVMLEAL G--LKVFNVV GPRKG-KHAP ELLVKAYKSV Porcine_transmi DYLKKNKSIA PGNAVFFENV IEHLSVLNAV GPRNGDSRVE AKLCNVYKAI Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat IKALF----L DKVDILLTVD GVNFTNRFVP VGENFGKSLG NVFCDGVNVT Bovine_enteric_ IKALF----L DKVDILLTVD GVNFTNRFVP VGESFGKSLG NVFCDGVNVT Bovine_CoV IKALF----L DKVDILLTVD GVNFTNRFVP VGESFGKSLG NVFCDGVNVT Murine_HepV IRALL----A NKVDVLCTVD GVNFRSCCVA EGEVFGKTLG SVFCDGINVT SARS_CoV LKSLLSLREV KTIKVFTTVD NTNLHTQLVD MSMTYGQQFG PTYLDGADVT Human_CoV NNEQG---TP LTPILSCGIF GIKLETSLEV LLDVCNTKEV KVFVY-TDTE Porcine_epidemi FANSG---VA LTPLISVGIF SVPLEESLSA FLACVGDRHC KCFCY-GDKE Porcine_transmi AKCEG---KI LTPLISVGIF NVRLETSLQC LLKTVNDRGL NVFVY-TDQE Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KHKCDINYKG KVFFQFDNLS SEDLKAVRSS FNFDQKELLA YYNMLVNCSK Bovine_enteric_ KHKCDINYKG KVFFQFDNLS SEDLKAVRSS FNFDQKELLA YYNMLVNCSK Bovine_CoV KHKCDINYKG KVFFQFDNLS SEDLKAVRSS FNFDQKELLA YYNMLVNCSK Murine_HepV KVRCSAIHKG KVFFQYSGLS AADLAAVKDA FGFDEPQLLQ YYSMLG-MCK SARS_CoV KIKPHVNHEG KTFFVLPSDD TLRSEAFEYY HTLDESFLGR YMSALNHTKK Human_CoV VCKVKDFVSG LVN-VQKVEQ PKIEPKPVSV IKVAPK---- ---PYRVDGK Porcine_epidemi REAIIKYMDG LVDAIFKEAL VDTTPVQEDV QQVSQKPVLP NFEPFRIEGA Porcine_transmi RQTIENFFS- ---------- ---------- ---------- ---------- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat WQVVFNGKYF TFKQANNNCF VNVSCLMLQS LNLKFKIVQW QEAWLEFRSG Bovine_enteric_ WQVVFNGKYF TFKQANNNCF VNVSCLMLQS LNLKFKIVQW QEAWLEFRSG Bovine_CoV WQVVFNGKYF TFKQANNNCF VNVSCLMLQS LNLKFKIVQW QEAWLEFRSG Murine_HepV WPVVVCGNYF AFKQSNNNCY INVACLMLQH LSLKFPKWQW RRPGNEFRSG SARS_CoV WKFPQVGGLT SIKWADNNCY LSSVLLALQQ LEVKFNAPAL QEAYYRARAG Human_CoV FSYFT---ED LLCVADDKPI VLFTDSMLTL DDRGLALDNA LSGVLSAAIK Porcine_epidemi HAFYECNPEG LMSLGADK-L VLFTNSNLDF CSVGKCLNDV TSGALLEAIN Porcine_transmi ---------- ---------- ---------- ---------- ---------- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat RPARFVSLVL AKGGFKFGDP ADSRDFLRVV FSQVDLTGAI CDFEIACK-C Bovine_enteric_ RPARFVSLVL AKGGFKFGDP ADSRDFLRVV FSQVDLTGAI CDFEIACK-C Bovine_CoV RPARFVSLVL AKGGFKFGDP ADSRDFLRVV FSQVDLTGAI CDFEIACK-C Murine_HepV KPLRFVSLVL AKGSFKFNEP SDSTDFIRVE LREADLSGAT CDLEFICK-C SARS_CoV DAANFCALIL AYSNKTVGEL GDVRETMTHL LQHANLESAK RVLNVVCKHC Human_CoV DCVDINKAIP SGNLIKFDIG -SVVVYMCVV PSEKDKHLDN NVQRCTRKLN Porcine_epidemi VFKKSNKTVP AGNCVTLDCA NMISITMVVL PFDGDANYDK NYARAVVKVS Porcine_transmi ---------- ---------- ---------- ---------- ---------- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GVKQEQRTGV DAVMHFGTLS REDLEIGYTV DCSCG-KKLI HCVRFDVPFL Bovine_enteric_ GVKQEQRTGV DAVMHFGTLS REDLEIGYTV DCSCG-KKLI HCVRFDVPFL Bovine_CoV GVKQEQRTGV DAVMHFGTLS REDLEIGYTV DCSCG-KKLI HCVRFDVPFL Murine_HepV GVKQEQRKGV DAVMHFGTLD KSGLVKGYNI ACTCG-DKLV HCTQFNVPFL SARS_CoV GQKTTTLTGV EAVMYMGTLS YDNLKTGVSI PCVCGRDATQ YLVQQESSFV Human_CoV RLMCDIVCTI P-ADYILPLV LSSLTCNVSF VGELKAAEA- KVITIKVTED Porcine_epidemi KLKGKLVLAV DDATLYSKLS HLSVLGFVST PDDVERFYAN KSVVIKVTED Porcine_transmi ---------- ---------- ---------- ---------- CSIPVNVTED Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ICSNTPASVK LPKG-VGSAN IFKG-DKVGH YVHVKCEQSY QLYDASNVKK Bovine_enteric_ ICSNTPASVK LPKG-VGSAN IFKG-DKVGH YVHVKCEQSY QLYDASNVKK Bovine_CoV ICSNTPASVK LPKG-VGSAN IFKG-DKVGH YVHVKCEQSY QLYDASNVKK Murine_HepV ICSNTPEGKK LPDD-VVAAN IFTG-GSVGH YTHVKCKPKY QLYDACNVSK SARS_CoV MMSAPPAEYK LQQGTFLCAN EYTGNYQCGH YTHITAKETL YRIDGAHLTK Human_CoV GVNVHDVTVT TDKS----FE QQVG-VIADK DKDLSGAVPS DLNTSELLTK Porcine_epidemi TRSVKAVKVE STAT----YG QQIG-PCLVN DTVVTDNKP- -VVADVVAKV Porcine_transmi NVNHERVSVS FDKT----YG EQLKGTVVIK DKDVTNQLPS AFDVGQKVIK Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VTDVTGNLSD CLYLKNLKQT FKSVLTTYYL DDVKKIEYKP DLSQYYCDGG Bovine_enteric_ VTDVTGNLSD CLYLKNLKQT FKSVLTTYYL DDVKKIEYNP DLSQYYCDGG Bovine_CoV VTDVTGNLSD CLYLKNLKQT FKSVLTTYYL DDVKKIEYKP DLSQYYCDGG Murine_HepV VSEAKGNFTD CLYLKNLKQT FSSVLTTYYL DDVKCVAYKP DLSQYYCESG SARS_CoV MSEYKGPVTD VFYKETSYTT TIKPVS-YKL DGVTYTEIEP KLDGYYKKDN Human_CoV AIDVDWVEFY GFKDAVTFAT VDHSAFAYES AVVNGIRVLK TSDNNCWVNA Porcine_epidemi VPNANWDSHY GFDKAGEFHM LDHTGFTFPS EVVNGRRVIK TTDNNCWVNV Porcine_transmi AIDIDWQAHY GFRDAAAFSA SSHDAYKFEV VTHSNFIVHK QTDNNCWINA Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KYYTQRIIKA QFKTFEKVDG VYTNFKLIG- -HTICDILNA KLGFDSSKEF Bovine_enteric_ KYYTQRIIKA QFKTFEKVDG VYTNFKLIG- -HTICDILNA KLGFDSSKEF Bovine_CoV KYYTQRIIKA QFKTFEKVDG VYTNFKLIG- -HTVCDILNA KLGFDSSKEF Murine_HepV KYYTKPIIKA QFRTFEKVEG VYTNFKLVG- -HDIAEKLNA KLGFDCNSPF SARS_CoV AYYTEQPIDL VP-TQPLPNA SFDNFKLTCS NTKFADDLNQ MTGFTKP-AS Human_CoV VCIALQYSKP HFISQG-LDA AWNKFVLGDV EIFVAFVYYV ARLMKGDKGD Porcine_epidemi TCLQLQFARF RFKSAG-LQA MWESYCTGDV AMFVHWLYWL TGVDKGQPSD Porcine_transmi ICLALQRLKP QWKFPG-VRG LWNEFLERKT QGFVHMLYHI SGVKKGEPGD Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VEYKVTEWPT ATGDVVLATD DLYVKRYERG CITFGKPVIW LSHEQASLNS Bovine_enteric_ VEYKVTEWPT ATGDVVLATD DLYVKRYERG CITFGKPVIW LSHEQASLNS Bovine_CoV VEYKVTEWPT ATGDVVLATD DLYVKRYERG CITFGKPVIW LSHEQASLNS Murine_HepV MEYKITEWPT ATGDVVLASD DLYVSRYSGG CVTFGKPVIW RGHEEASLKS SARS_CoV RELSVTFFPD LNGDVVAIDY RHYSASFKKG AKLLHKPIVW HINQATTKTT Human_CoV AEDTLTKLSK YLANEAQVQL EHYSSCVECD AKFKNSVASI NSAIVCASVK Porcine_epidemi SENALNMLSK YIVPAGSVTI ERVTHDGCCC SKR-----VV TAPVVNASVL Porcine_transmi AELMLHKLGD LMDNDCEIIV THTTACDKCA KVEK-----F VGPVVAAPLA Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LT-------- YFNRPLLVDE NKFDVLKVDD VD-------- ---------- Bovine_enteric_ LT-------- YFNRPLLVDE NKFDVLKVDD VD-------- ---------- Bovine_CoV LT-------- YFNRPLLVDE NKFDVLKVDD VD-------- ---------- Murine_HepV LT-------- YFNRPSVVCE NKFNVLPVDV SEPTDRRPVP SAVLVTGAAS SARS_CoV FKPNTWCLRC LWSTKPVDTS NSFEVLAVED TQG------- ---------- Human_CoV RD-------- GVQVGYCVHG IKYYSRVRSV RG-------- ---------- Porcine_epidemi KL-------- GVEDGLCPHG LNYIGKVVVV KG-------- ---------- Porcine_transmi IH-------- GTDE-TCVHG VSVNVKVTQI KG-------- ---------- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat --DGGDISES D--AKESKE- ---------- ---------- ---INIIKLS Bovine_enteric_ --DGGDISES D--AKESKE- ---------- ---------- ---INIIKLS Bovine_CoV --DGGDISES D--AKEPKE- ---------- ---------- ---INIIKLS Murine_HepV GADASAISTE PGTAKEQKAC ASDSVEDQIV MEAQKKSSVT TVAVKEVKLN SARS_CoV -MDNLACESQ QPTSEEVVEN ---------- ---------- -PTIQKEVIE Human_CoV ---------- ---------- ---------- ---------- -----RAIIV Porcine_epidemi ---------- ---------- ---------- ---------- -----TTIVV Porcine_transmi ---------- ---------- ---------- ---------- -----TVAIT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GVKKPFKVED SVIVNDDTSE IKYVKSLSIV DVYDMWLTGC RYVVRTANDL Bovine_enteric_ GVKKPFKVED SVIVNDDTSE IKYVKSLSIV DVYDMWLTGC RYVVRTANAL Bovine_CoV GVKKPFKVED SVIVNDDTSE IKYVKSLSIV DVYDMWLTGC RCVVRTANAL Murine_HepV GVKKPVKWNC SVVVNDPTSE TKVVKSLSIV DVYDMFLTGC RYVVWTANEL SARS_CoV CDVKTTEVVG NVILKPSDEG VKVTQELGHE DLMAAYVENT SITIKKPNEL Human_CoV SVEQLEPCAQ SRLLSGVAYT AFS--GPVDK GHYTVYDTAK KSMYDGDRFV Porcine_epidemi NVGKPVVAPS HLFLKGVSYT TFLDNGNGVV GHYTVFDHGT GMVHDGDAFV Porcine_transmi SLIGPIIG-- -EVLEATGYI CYS--GSNRN GHYTYYDNRN GLVVDAEKAY Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat SMAVNVPTIR KFIKFG---- ---------- ------MTLV SIPIDLLNLR Bovine_enteric_ SMAVNVPTIR KFIKFG---- ---------- ------MTLV SIPIDLLNLR Bovine_CoV SRAVNVPTIR KFIKFG---- ---------- ------MTLV SIPIDLLNLR Murine_HepV SRLINSPTVR EYVKWG---- ---------- ------MSKL IIPANLLLLR SARS_CoV SLALGLKTIA THGIAA---- ---------- ------INSV PWSKILAYVK Human_CoV KHDLSLLSVT SVVMV----- ---------- -------GGY VAPVN----- Porcine_epidemi PGDLNVSPVT NVVVS----- ---------- -------EQT AVVIKDPVKK Porcine_transmi HFNRDLLQVT TAIASNFVVK KPQAEERPKN CAFNKVAASP KIVQEQKLLA Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat EIKPVFNVVK AVRNKISACF NFIKWLFVLL FGWIKISADN KVIYTTEVAS Bovine_enteric_ EIKPVFNVVK AVRNKISACF NFIKWLFVLL FGWIKISADN KVIYTTEVAS Bovine_CoV EIKPVFNVVK AVRNKISACF NFIKWLFVLL FGWIKISADN KVIYTTEVAS Murine_HepV DEKQEFVAPK VVKAKAIACY GAVKWFLLYC FSWIKFNTDN KVIYTTEVAS SARS_CoV PFLG-----Q AAITTSNCAK RLAQRVFNNY MPYVFTLLFQ LCTFTKSTNS Human_CoV -TVKPKPVIN QLDEKAQKFF DFGDFLIHNF VIFFTWLLSM FTLCKTAVTT Porcine_epidemi AELDATKLLD TMNYASERFF SFGDFMSRNL ITVFLYILSI LGLCFRAFRK Porcine_transmi IESGANYALT EFGRYADMFF MAGDKILRLL LEVFKYLLVL F-MCLRSTKM Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KLTCKLVALA FKNAFLTFKW SVVARGACII ATIFLLWFNF IYANVIFSDF Bovine_enteric_ KLTCKLVALA FKNAFLTFKW SVVARGACII ATIFLLWFNF IYANVIFSDF Bovine_CoV KLTCKLVALA FKNAFLTFKW SVVARGACII ATIFLLWFNF IYANVIFSDF Murine_HepV KLTFKLCCLA FKNALQTFNW SVVSRGFFLV ATVFLLWFNF LYANVILSDF SARS_CoV RIRASLPTTI AKNSVKSVAK LCLDAGINYV KSPKFSKLFT IAMWLLLLSI Human_CoV GDVKIMAKAP QRTGVVLKRS LKYNLKASAA VLKSKWWLLA KFTKLLLLIY Porcine_epidemi RDVKVLAGVP QRTGIILRKS MRYNAKALGV FFKLKLYWFK VLGKFSLGIY Porcine_transmi PKVKVKPPLA FKDFGAKVRT LNY------- MRQLNKPSVW RYAKLVLLLI Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat YLPKIGFLPT FVGKIAQWIK STFSLVTICD LYSIQDVGFK NQYCNGSIAC Bovine_enteric_ YLPKIGFLPT FVGKIAQWIK STFSLVTICD LYSIQDVGFK NQYCNGSIAC Bovine_CoV YLPKIGFLPT FVGKIVQWIK NTFSLVTICD LYSIQDVGFK NQYCNGSIAC Murine_HepV YLPNIGPLPM FVGQIVAWVK TTFGVLTICD FYQVTDLGYR SSFCNGSMVC SARS_CoV CLGSLICVTA AFGVLLSNFG APSYCNGVRE LYLNSSNVTT MDFCEGSFPC Human_CoV TLYSVVLLCV RFGPFN--FC SETVNG---- --YAKSNFVK DDYCDGSLGC Porcine_epidemi ALYALLFMTI RFTPIGSPVC DDVVAG---- --YANSSFDK NEYCN-SVIC Porcine_transmi AIYNFFYLFV SIPVVHKLTC NGAVQA---- --YKNSSFIK SAVCGNSILC Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat QFCLAGFDML DNYKAIDVVQ YEADRRAFVD YTGVLKIVIE LIVSYALYTA Bovine_enteric_ QFCLAGFDML DNYKAIDVVQ YEADRRAFVD YTGVLKIVIE LIVSYALYTA Bovine_CoV QFCLAGFDML DNYKAIDVVQ YEADRRAFVD YTGVLKIVIE LIVSYALYTA Murine_HepV ELCFSGFDML DNYESINVVQ HVVDRRVSFD YISLFKLVVE LVIGYSLYTV SARS_CoV SICLSGLDSL DSYPALETIQ VTIS--SYKL DLTILGLAAE WVLAYMLFTK Human_CoV KMCLFGYQEL SQFSHLDVVW KHITDPLFSN MQPFIVMVLL LIFG-DNYLR Porcine_epidemi KVCLYGYQEL SDFSHTQVVW QHLRDPLIGN VMPFFYLAFL AIFG-GVYVK Porcine_transmi KACLASYDEL ADFQHLQVTW DFKSDPLWNR LVQLSYFAFL AVFG-NNYVR Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat WFYPLFALIS IQILTTWLPE LFMLSTLHWS VRLLVSLANM LPAHVFMRFY Bovine_enteric_ WFYPLFALIS IQILTTWLPE LFMLSTLHWS VRLLVSLANM LPAHVFMRFY Bovine_CoV WFYPLFALIS IQILTTWLPE LLMLSTLHWS VRLLVSLANM LPAHVFMRFY Murine_HepV CFYPLFVLVG MQLLTTWLPE FFMLGTMHWS ARLFVFVANM LPAFTLLRFY SARS_CoV FFYLLGLSAI MQVFFGYFAS HFISN--SWL MWFIISIVQM APVSAMVRMY Human_CoV CFLLYFVAQM ISTVGVFLGY KETN------ -----WFLHF IPFDVICDEL Porcine_epidemi AITLYFIFQY LNSLGVFLGL QQSI------ -----WFLQL VPFDVFGDEI Porcine_transmi CFLMYFVSQY LNLWLSYFGY VEYS------ -----WFLHV VNFESISAEF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat IIIASFIKLF SLFRHVAYGC SKPGCLFCYK RNRSLRVKCS TIVGGMIRYY Bovine_enteric_ IIIASFIKLF ILFRHVAYGC SKPGCLFCYK RNRSLRVKCS TIVGGMIRYY Bovine_CoV IIIASFIKLF SLFRHVAYGC SKSGCLFCYK RNRSLRVKCS TIVGGMIRYY Murine_HepV IVVTAMYKVY CLCRHVMYGC SKPGCLFCYK RNRSVRVKCS TVVGGSLRYY SARS_CoV IFFASFYYIW KSYVHIMDGC TSSTCMMCYK RNRATRVECT TIVNGMKRSF Human_CoV LVTVIVIKVI SFVRHVLFGC ENPDCIACSK SARLKRFPVN TIVNGVQRSF Porcine_epidemi VVFFIVTRVL MFIKHVCLGC DKASCVACSK SARLKRVPVQ TIFQGTSKSF Porcine_transmi VIVVIVVKAV LALKHIVFAC SNPSCKTCSR TARQTRIPIQ VVVNGSMKTV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DVMANGGTGF CSKHQWNCID CDSYKPGNTF ITVEAALDLS KELKRPIQPT Bovine_enteric_ DVMANGGTGF CSKHQWNCID CDSYKPGNTF ITVEAALDLS KELKRPIQPT Bovine_CoV DVMANGGTGF CSKHQWNCID CDSYKPGNTF ITVEAALDLS KELKRPIQPT Murine_HepV DVMANGGTGF CTKHQWNCLN CNSWKPGNTF ITHEAAADLS KELKRPVNPT SARS_CoV YVYANGGRGF CKTHNWNCLN CDTFCTGSTF ISDEVARDLS LQFKRPINPT Human_CoV YVNANGGSKF CKKHRFFCVD CDSYGYGSTF ITPEVSRELG NITKTNVQPT Porcine_epidemi YVHANGGSKF CKKHNFFCLN CDSYGPGCTF INDVIATEVG NVVKLNVQPT Porcine_transmi YVHANGTGKF CKKHNFYCKN CDSYGFENTF ICDEIVRDLS NSVKQTVYAT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DVAYHTVTDV KQVGCYMRLF YERDGQRTYD DVNASLFVDY SNLLHSKVKG Bovine_enteric_ DVAYHTVTDV KQVGCYMRLF YERDGQRTYD DVNASLFVDY SNLLHSKVKG Bovine_CoV DVAYHTVTDV KQVGCYMRLF YDRDGQRTYD DVNASLFVDY SNLLHSKVKS Murine_HepV DSAYYSVIEV KQVGCSMRLF YERDGQRVYD DVSASLFVDM NGLLHSKVKG SARS_CoV DQSSYIVDSV AVKNGALHLY FDKAGQKTYE RHPLSHFVNL DNLRANNTKG Human_CoV GPAYVMIDKV EFENGFYRLY SCETFWRYNF DITESKYSCK EVFKN----C Porcine_epidemi GPATILIDKV EFSNGFYYLY SGDTFWKYNF DITDSKYTCK EALKN----C Porcine_transmi DRSHQEVTKV ECSDGFYRFY VGDEFTSYDY DVKHKKYSSQ EVLKS----M Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VPNMHVVVVE N--DADKANF LNAAVFYAQS LFRPILMVDK NLITTANTGT Bovine_enteric_ VPNMHVVVVE N--DADKANF LNAAVFYAQS LFRPILMVDK NLITTANTGT Bovine_CoV VPNMHVVVVE N--DADKANF LNAAVFYAQS LFRPILMVDK ILITTANTGT Murine_HepV VPETHVVVVE N--EADKAGF LNAAVFYAQS LYRPMLMVEK KLITTANTGL SARS_CoV SLPINVIVFD GKSKCDESAS KSASVYYSQL MCQPILLLDQ ALVSDVGDST Human_CoV NVLDDFIVFN N-NGTNVTQV KNASVYFSQL LCRPIKLVDS ELLSTL--SV Porcine_epidemi SIITDFIVFN N-NGSNVNQV KNACVYFSQM LCKPVKLVDS ALLASL--SV Porcine_transmi LLLDDFIVYS P-SGSALANV RNACVYFSQL IGKPIKIVNS DLLEDL--SV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat SVTETMFDVY VDTFLSMFDV DKKSLNALIA TAHSSIKQGT QICKVLDTFL Bovine_enteric_ SVTETMFDVY VDTFLSMFDV DKKSLNALIA TAHSSIKQGT QICKVLDTFL Bovine_CoV SVTETMFDVY VDTFLSMFDV DKKSLNALIA TAHSSIKQGT QICKVLDTFL Murine_HepV SVSRTMFDLY VYSLLRHLDV DRKSLTSFVN AAHNSLKEGV QLEQVMDTFV SARS_CoV EVSVKMFDAY VDTFSATFSV PMEKLKALVA TAHSELAKGV ALDGVLSTFV Human_CoV DFNGVLHKAY IDVLRNSFGK DLNANMSLAE CKRALGLS-- ---------- Porcine_epidemi DFGASLHSAF VSVLSNSFGK DLSSCNDMQD CKSTLGFD-- ---------- Porcine_transmi DFKGALFNAK KNVIKNSFNV DVSECKNLDE CYRACNLN-- ---------- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat SCARKSCSID SDVDTKCLAD SVMSAVSAGL ELTDESCNNL VPTYLKGDN- Bovine_enteric_ SCARKSCSID SDVDTKCLAD SVMSAVSAGL ELTDESCNNL VPTYLKGDN- Bovine_CoV SCARKSCSID SDVDTKCLAD SVMSAVSAGL ELTDESCNNL VPTYLKGDN- Murine_HepV GCARRKCAID SDVETKSITK SVMAAVNAGV EVTDESCNNL VPTYVKSDT- SARS_CoV SAARQG-VVD TDVDTKDVIE CLKLSHHSDL EVTGDSCNNF MLTYNKVEN- Human_CoV ---------- --ISDHEFTS AISNAHRCDV LLSDLSFNNF VSSYAKPEEK Porcine_epidemi ---------- -DVPLDTFNA AVAEAHRYDV LLTDMSFNNF TTSYAKPEEK Porcine_transmi ---------- --VSFSTFEM AVNNAHRFGI LITDRSFNNF WPSKVKPGSS Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat -IVAADLGVL IQNSAKHVQG NVAKIAGVSC IWSVDAFNQL SSDFQHKLKK Bovine_enteric_ -IVAADLGVL IQNSAKHVQG NVAKIAGVSC IWSVDAFNQL SSDFQHKLKK Bovine_CoV -IVAADLGVL IQNSAKHVQG NVAKIAGVSC IWSVDAFNQL SSDFQHKLKK Murine_HepV -IVAADLGVL IQNNAKHVQS NVAKAANVAC IWSVDAFNQL SADLQHRLRK SARS_CoV -MTPRDLGAC IDCNARHINA QVAKSHNVSL IWNVKDYMSL SEQLRKQIRS Human_CoV -LSAYDLACC MRAGAKVVNA NVLTKDQTPI VWHAKDFNSL SAEGRKYIVK Porcine_epidemi -FPVHDIATC MRVGAKIVNH NVLVKDSIPV VWLVRDFIAL SEETRKYIIR Porcine_transmi GVSAMDIGKC MTSDAKIVNA KVLTQRGKSV VWLSQDFAAL SSTAQKVLVK Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ACCKTGLKLK LTYNKQMANV SVL----TTP FSLKGGAVFS YFVYVCFLLS Bovine_enteric_ ACCKTGLKLK LTYNKQMANV SVL----TTP FSLKGGAVFS YFVYVCFLLS Bovine_CoV ACCKTGLKLE LTYNKQMANV SVL----TTP FSLKGGAVFS YFVYVCFVLS Murine_HepV ACVKTGLKIK LTYNKQEANV PIL----TTP FSLKGGAVFS RVLQWLFVAN SARS_CoV AAKKNNIPFR LTCATTRQVV NVI----TTK ISLKGGKIVS TCFKLMLKAT Human_CoV TSKAKGLTFL LTINENQAVT QIP----ATS IVAKQGAGDA GHS--LTWLW Porcine_epidemi TTKVKGITFM LTFNDCRMHT TIP----TVC IANKKGAGLP SFSKVKKFFW Porcine_transmi TFVEEGVNFS LTFNAVGSDD DLPYERFTES VSPKSGSGFF DVITQLKQIV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LVCFIG---L WCLMPTYTVH KSDFQLP-VY TSYKVLDNGV IRDVSVEDVC Bovine_enteric_ LVCFIG---L WCLMPTYTVH KSDFQLP-VY ASYKVLDNGV IRDVSVEDVC Bovine_CoV LVCFIG---L WCLMPTYTVH KSDFQLP-VY ASYKVLDNGV IRDVSVEDVC Murine_HepV LICFIV---L WALMPTYAVH KSDMQLP-LY ASFKVIDNGV LRDVSVTDAC SARS_CoV LLCVLAALVC YIVMPVHTLS IHDGYTN-EI IGYKAIQDGV TRDIISTDDC Human_CoV LLCGLVCLIQ FYLCFFMPYF MYDIVSSFEG YDFKYIENGQ LKNFEAPLKC Porcine_epidemi FLCLFIVAAF FALSFLD--- FSTQVSSDSD YDFKYIESGQ LKTFDNPLSC Porcine_transmi ILV-FVFIFI CGLCSVYSVA TQSYIESAEG YDYMVIKNGI VQPFDDTISC Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat FANKFEQFDQ WYESTFGLSY YSNSMACPIV VAVVDQDLGS TVFNVPTKVL Bovine_enteric_ FANKFEQFDQ WYESTFGLSY YSNSMACPIV VAVVDQDLGS TVFNVPTKVL Bovine_CoV FANKFEQFDQ WYESTFGLSY YSNSMACPIV VAVVDQDFGS TVFNVPTKVL Murine_HepV FANKFNQFDQ WYESTFGLVY YRNSKACPVV VAVIDQDIGH TLFNVPTKVL SARS_CoV FANKHAGFDA WFSQRGGS-- YKNDKSCPVV AAIITREIGF IVPGLPGTVL Human_CoV VRNVFENFED WHYAKFGFTP LNKQSCPIVV G---VSEIVN TVAGIPSNVY Porcine_epidemi VHNVFINFDQ WHDAKFGFTP VNNPSCPIVV G---VSDEAR TVPGIPAGVY Porcine_transmi VHNTYKGFGD WFKAKYGFIP TFGKSCPIVV GTVFDLENMR PIPDVPAYVS Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat RYG-YHVLHF ITHALSADGV QCYTPHSQIS YSNFYASGCV LSSACTMFAM Bovine_enteric_ RYG-YHVLHF ITHALSADGV QCYTPHSQIS YSNFYASGCV LSSACTMFAM Bovine_CoV RYG-YHVLHF ITHALSADGV QCYTPHSQIS YSNFYASGCV LSSACTMFAM Murine_HepV RYG-FHVLHF ITHAFATDRV QCYTPHMQIP YDNFYASGCV LSSLCTMLAH SARS_CoV RAINGDFLHF LPRVFSAVGN ICYTPSKLIE YSDFATSACV LAAECTIFKD Human_CoV LVG--KTLIF TLQAAFGNAG VCYDIFG--- --VTTPEKCI FTSACTRLEG Porcine_epidemi LAG--KTLVF AINTIFGTSG LCFDASG--- --VADKGACI FNSACTTLSG Porcine_transmi IVG--RSLVF AINAAFGVTN MCYDHTGNAV SKDSYFDTCV FNTACTTLTG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ADGSPQPYCY TEGLMQNASL YSSLVPHVRY NLANAKGFIR FPEVLREGL- Bovine_enteric_ ADGSPQPYCY TEGLMQNASL YSSLVPHVRY NLANAKGFIR FPEVLREGL- Bovine_CoV ADGSPQPYCY TDGLMQNASL YSSLVPHVRY NLANAKGFIR LPEVLREGL- Murine_HepV ADGTPHPYCY TEGVMHNASL YSSLVPHVRY NLASSNGYIR FPEVVSEGI- SARS_CoV AMGKPVPYCY DTNLLEGSIS YSELRPDTRY VLMDG-SIIQ FPNTYLEGS- Human_CoV LGGN-NVYCY NTALMEGSLP YSSIQANAYY KYDNGN-FIK LPEVIAQGFG Porcine_epidemi LGGT-AVYCY KNGLVEGAKL YSELAPHSYY KMVDGN-AVS LPEIISRGFG Porcine_transmi LGGT-IVYCA KQGLVEGAKL YSDLMPDYYY EHASGN-MVK LPAIIRG-LG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VRIVRTRSMS YCRVGLCEEA DEGICFNFNG SWVLNNDYYR SLPGTFCGRD Bovine_enteric_ VRIVRTRSMS YCRVGLCEEA DEGICFNFNG SWVLNNDYYR SLPGTFCGRD Bovine_CoV VRIVRTRSMS YCRVGLCEEA DEGICFNFNG SWVLNNDYYR SLPGTFCGRD Murine_HepV VRVVRTRSMT YCRVGLCEEA EEGICFNFNS SWVLNNPYYR AMPGTFCGRN SARS_CoV VRVVTTFDAE YCRHGTCERS EVGICLSTSG RWVLNNEHYR ALSGVFCGVD Human_CoV FRTVRTIATK YCRVGECVES NAGVCFGFDK WFVNDGRVA- --NGYVCGTG Porcine_epidemi IRTIRTKAMT YCRVGQCVQS AEGVCFGADR FFVYNAESG- --SDFVCGTG Porcine_transmi LRFVKTQATT YCRVGECIDS KAGFCFGGDN WFVYDNEFG- --NGYICGNS Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VFDLIYQLFK GLAQPVDFLA LTASSIAGAI LAVIVVLVFY YLIKLKRAFG Bovine_enteric_ VFDLIYQLFK GLAQPVDFLA LTASSIAGAI LAVIVVLVFY YLIKLKRAFG Bovine_CoV VFDLIYQLFK GLAQPVDFLA LTASSIAGAI LAVIVVLGFY YLIKLKRAFG Murine_HepV AFDLIHQVLG GLVQPIDFFA LTASSVAGAI LAIIVVLAFY YLIKLKRAFG SARS_CoV AMNLIANIFT PLVQPVGALD VSASVVAGGI IAILVTCAAY YFMKFRRVFG Human_CoV LWNLVFNILS MFSSSFSVAA MSGQILLNCA LGAFAIFCCF LVTKFRRMFG Porcine_epidemi LFTLLMNVIS VFSKTVPVTV LSGQILFNCI IAFVAVAVCF LFTKFKRMFG Porcine_transmi VLGFFKNVFK LFNSNMSVVA TSGAMLVNII IACLAIAMCY GVLKFKKIFG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DYTSIVFVNV IVWCVNFMML FVFQVYPTLS CVYAICYFYA TLYFPSEISV Bovine_enteric_ DYTSIVFVNV IVWCVNFMML FVFQVYPTLS CVYAICYFYA TLYFPSEISV Bovine_CoV DYTSIVFVNV IVWCVNFMML FVFQVYPTLS CVYAICYFYA TLYFPSEISV Murine_HepV DYTSVVVINV IVWCINFLML FVFQVYPTLS CLYACFYFYT TLYFPSEISV SARS_CoV EYNHVVAANA LLFLMSFTIL CLVPAYSFLP GVYSVFYLYL TFYFTNDVSF Human_CoV DLSVGVCTVV VAVLLNNVSY IVTQN-LVTM IAYAILYFFA TRSLR--YAW Porcine_epidemi DMSVGVFTVG ACTLLNNVSY IVTQN-TLGM LGYATLYFLC TKGVR--YMW Porcine_transmi DCTFLIVMII VTLVVNNVSY FVTQN-TFFM IIYAIVYYFI TRKLA--YPG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat IMHLQWLVMY GTIMPLWFCL LYISVVVSNH AFWVFAYCRR LGTSVR--SD Bovine_enteric_ IMHLQWLVMY GTIMPLWFCL LYISVVVSNH AFWVFAYCRR LGTSVR--SD Bovine_CoV IMHLQWLVMY GTIMPLWFCL LYISVVVSNH AFWVFSYCRQ LGTSVR--SD Murine_HepV VMHLQWLVMY GAIMPLWFCI TYVAVVVSNH ALWLFSYCRK IGTDVR--SD SARS_CoV LAHLQWFAMF SPIVPFWITA IYVFCISLKH CHWFFNNYLR KRVMFNGVTF Human_CoV IWCAAYLIAY ISFAPWWLCA WYFLAMLTGL LPSLLKLKVS TNLFEGDKFV Porcine_epidemi IWHLGFLISY ILIAPWWVLM VYAFSAIFEF MPNLFKLKVS TQLFEGDKFV Porcine_transmi ILDAGFIIAY INMAPWYVIT AYILVFLYDS LPSLFKLKVS TNLFEGDKFV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GTFEEMALTT FMITKDSYCK LKNS--LSDV AFNRYLSLYN KYRYYSGKMD Bovine_enteric_ GTFEEMALTT FMITKDSYCK LKNS--LSDV AFNRYLSLYN KYRYYSGKMD Bovine_CoV GTFEEMALTT FMITKDSYCK LKNS--LSDV AFNRYLSLYN KYRYYSGKMD Murine_HepV GTFEEMALTT FMITKESYCK LKNS--VSDV AFNRYLSLYN KYRYFSGKMD SARS_CoV STFEEAALCT FLLNKEMYLK LRSETLLPLT QYNRYLALYN KYKYFSGALD Human_CoV GTFESAAAGT FVIDMRSYEK LANS--ISPE KLKSYAASYN RYKYYSGNAN Porcine_epidemi GSFENAAAGT FVLDMHAYER LANS--ISTE KLRQYASTYN KYKYYSGSAS Porcine_transmi GNFESAAMGT FVIDMRSYET IVNS--TSIA RIKSYANSFN KYKYYTGSMG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat TAAYREAACS QLAKAMDTFT NNNGSDVLYQ PPTASVSTSF LQSGIVKMVN Bovine_enteric_ TAAYREAACS QLAKAMDTFT NNNGSDVLYQ PPTASVSTSF LQSGIVKMVN Bovine_CoV TAAYREAACS QLAKAMDTFT NNNGSDVLYQ PPTASVSTSF LQSGIVKMVN Murine_HepV TATYREAACS QLAKAMETFN HNNGNDVLYQ PPTASVTTSF LQSGIVKMVS SARS_CoV TTSYREAACC HLAKALNDFS -NSGADVLYQ PPQTSITSAV LQSGFRKMAF Human_CoV EADYRCACYA YLAKAMLDFS RDHN-DILYT PPTVSYG-ST LQAGLRKMAQ Porcine_epidemi EADYRLACFA HLAKAMMDYA SNHN-DTLYT PPTVSYN-ST LQAGLRKMAQ Porcine_transmi EADYRMACYA HLGKALMDYS VNRT-DMLYT PPTVSVN-ST LQSGLRKMAQ Feline_infectio ---------- ---------- ---------- -PTVSVN-ST LQSGLRKMAQ Bovine_respirat PTSKVEPCIV SVTYGNMTLN GLWLDDKVYC PRHVICSASD MTNPDYTNLL Bovine_enteric_ PTSKVEPCIV SVTYGNMTLN GLWLDDKVYC PRHVICSASD MTNPDYTNLL Bovine_CoV PTSKVEPCIV SVTYGNMTLN GLWLDDKVYC PRHVICSASD MTNPDYTNLL Murine_HepV PTSKVEPCVV SVTYGNMTLN GLWLDDKVYC PRHVICSSAD MTDPDYPNLL SARS_CoV PSGKVEGCMV QVTCGTTTLN GLWLDDTVYC PRHVICTAED MLNPNYEDLL Human_CoV PSGFVEKCVV RVCYGNTVLN GLWLGDIVYC PRHVIASNTT SA-IDYDHEY Porcine_epidemi PSGVVEKCIV RVCYGNMALN GLWLGDIVMC PRHVIASSTT ST-IDYDYAL Porcine_transmi PSGLVEPCIV RVSYGNNVLN GLWLGDEVIC PRHVIASDTT RV-INYENEM Feline_infectio PSGVVEPCIV RVAYGNNVLN GLWLGDEVIC PRHVIASDTS RV-INYENEL Bovine_respirat CRVTSSDFTV LFDRLSLTVM SYQMQGCMLV LTVTLQNSRT PKYTFGVVKP Bovine_enteric_ CRVTSSDFTV LFDRLSLTVM SYQMQGCMLV LTVTLQNSRT PKYTFGVVKP Bovine_CoV CRVTSSDFTV LFDRLSLTVM SYQMQGCMLV LTVTLQNSRT PKYTFGVVKP Murine_HepV CRVTSSDFCV MSDRMSLTVM SYQMQGSLLV LTVTLQNPNT PKYSFGVVKP SARS_CoV IRKSNHSFLV QAGNVQLRVI GHSMQNCLLR LKVDTSNPKT PKYKFVRIQP Human_CoV SIMRLHNFSI ISGTAFLGVV GATMHGVTLK IKVSQTNMHT PRHSFRTLKS Porcine_epidemi SVLRLHNFSI SSGNVFLGVV SATMRGALLQ IKVNQNNVHT PKYTYRTVRP Porcine_transmi SSVRLHNFSV SKNNVFLGVV SARYKGVNLV LKVNQVNPNT PEHKFKSIKA Feline_infectio SSVRLHNFSI AKNNAFLGVV SAKYKGVNLV LKVNQVNPNT PEHKFKSVRP Bovine_respirat GETFTVLAAY NGKPQGAFHV TMRSSYTIKG SFLCGSCGSV GYVLMGDCVK Bovine_enteric_ GETFTVLAAY NGKPQGAFHV TMRSSYTIKG SFLCGSCGSV GYVLMGDCVK Bovine_CoV GETFTVLAAY NGKPQGAFHV TMRSSYTIKG SFLCGSCGSV GYVIMGDCVK Murine_HepV GETFTVLAAY NGRPQGAFHV VMRSSHTIKG SFLCGSCGSV GYVLTGDSVR SARS_CoV GQTFSVLACY NGSPSGVYQC AMRPNHTIKG SFLNGSCGSV GFNIDYDCVS Human_CoV GEGFNILACY DGCAQGVFGV NMRTNWTIRG SFINGACGSP GYNLKNGEVE Porcine_epidemi GESFNILACY DGAAAGVYGV NMRSNYTIRG SFINGACGSP GYNINNGTVE Porcine_transmi GESFNILACY EGCPGSVYGV NMRSQGTIKG SFIAGTCGSV GYVLENGILY Feline_infectio GESFNILACY EGCPGSVYGV NMRSQGTIKG SFIAGTCGSV GYVLENGTLY Bovine_respirat FVYMHQLELS TGCHTGTDFN GDFYGPYKDA QVVQLPVQDY IQSVNFVAWL Bovine_enteric_ FVYMHQLELS TGCHTGTDFN GDFYGPYKDA QVVQLPVQDY IQSVNFVAWL Bovine_CoV FVYMHQLELS TGCHTGTDFN GDFYGPYKDA QVVQLPVQDY IQSVNFVAWL Murine_HepV FVYMHQLELS TGCHTGTDFS GNFYGPYRDA QVVQLPVQDY TQTVNVVAWL SARS_CoV FCYMHHMELP TGVHAGTDLE GKFYGPFVDR QTAQAAGTDT TITLNVLAWL Human_CoV FVYMHQIELG SGSHVGSSFD GVMYGGFEDQ PNLQVESANQ MLTVNVVAFL Porcine_epidemi FCYLHQLELG SGCHVGSDLD GVMYGGYEDQ PTLQVEGASS LFTENVLAFL Porcine_transmi FVYMHHLELG NGSHVGSNFE GEMYGGYEDQ PSMQLEGTNV MSSDNVVAFL Feline_infectio FVYMHHLELG NGSHVGSNLE GEMYGGYEDQ PSMQLEGTNV MSSDNVVAFL Bovine_respirat YAAILNNCNW FVQSDKCSVE DFNVWALSNG FSQVKSDLV- -IDALASMTG Bovine_enteric_ YAAILNNCNW FVQSDKCSVE DFNVWALSNG FSQVKSDLV- -IDALASMTG Bovine_CoV YAAILNNCNW FVQSDKCSVE DFNVWALSNG FSQVKSDLV- -IDALASMTG Murine_HepV YAAILNRCNW FVQSDSCSLE EFNVWAMTNG FSSIKADLV- -LDALASMTG SARS_CoV YAAVINGDRW FLNRFTTTLN DFNLVAMKYN YEPLTQDHVD ILGPLSAQTG Human_CoV YAAILNGCTW WLKGEKLFVE HYNEWAQANG FTAMNGEDA- -FSILAAKTG Porcine_epidemi YAALINGSTW WLSSSRIAVD RFNEWAVHNG MTTVGNTDC- -FSILAAKTG Porcine_transmi YAALINGERW FVTNTSMSLE SYNTWAKTNS FTELSSTDA- -FSMLAAKTG Feline_infectio YAALINGERW FVTNTSMTLE SYNAWAKTNS FTEIVSTDA- -FNMLAAKTG Bovine_respirat VSLETLLAAI KRLKN-GFQG RQIMGSCSFE DELTPSDVYQ QLAGIKLQSK Bovine_enteric_ VSLETLLAAI KRLKN-GFQG RQIMGSCSFE DELTPSDVYQ QLAGIKLQSK Bovine_CoV VSLETLLAAI KRLKN-GFQG RQIMGSCSFE DELTPSDVYQ QLAGIKLQSK Murine_HepV VTVEQVLAAI KRLHS-GFQG KQILGSCVLE DELTPSDVYQ QLAGVKLQSK SARS_CoV IAVLDMCAAL KELLQNGMNG RTILGSTILE DEFTPFDVVR QCSGVTFQGK Human_CoV VCVERLLHAI QVLNN-GFGG KQILGYSSLN DEFSINEVVK QMFGVNLQS- Porcine_epidemi VDVQRLLASI QSLHK-NFGG KQILGHTSLT DEFTTGEVVR QMYGVNLQG- Porcine_transmi QSVEKLLDSI VRLNK-GFGG RTILSYGSLC DEFTPTEVIR QMYGVNLQA- Feline_infectio YSVEKLLECI VRLNK-GFGG RTILSYGSLC DEFTPTEVIR QMYGVNLQS- Bovine_respirat RTRLVKGIVC WIMASTFLFS CIITAFVKWT MFMYVTTN-M LSITFCALCV Bovine_enteric_ RTRLVKGIVC WIMASTFLFS CIITAFVKWT MFMYVTTN-M LSITFCALCV Bovine_CoV RTRLVKGIVC WIMASTFLFS CIITAFVKWT MFMYVTTN-M LSITFCALCV Murine_HepV RTRVIKGTCC WILASTFLFC SIISAFVKWT MFMYVTTH-M LGVTLCALCF SARS_CoV FKKIVKGTHH WMLLTFLTSL LILVQSTQWS LFFFVYENAF LPFTLGIMAI Human_CoV --GKTTSMFK SISLFAGFFV MFWAELFVYT TTIWVNPGFL TPFMILLVAL Porcine_epidemi --GYVSRACR NVLLVGSFLT FFWSELVSYT KFFWVNPGYV TPMFACLSLL Porcine_transmi --GKVKSFFY PIMTAMTILF AFWLEFFMYT PFTWINPTFV SIVLAVTTLI Feline_infectio --GKVKSIFY P--------- ---------- ---------- ---------- Bovine_respirat ISLAMLLVKH KHLYLTMYII PVLFTLLYNN YLVV-YKQTF RGYVYAWLSY Bovine_enteric_ ISLAMLLVKH KHLYLTMYII PVLFTLLYNN YLVV-YKQTF RGYVYAWLSY Bovine_CoV ISLAMLLVKH KHLYLTMYII PVLFTLLYNN YLVV-YKQTF RGYVYAWLSY Murine_HepV VIFAMLLIKH KHLYLTMYIM PVLCTLFYTN YLVVGYKQSF RGLAYAWLSY SARS_CoV AACAMLLVKH KHAFLCLFLL PSLATVAYFN MVYMPASWVM R--IMTWLEL Human_CoV SLCLTFVVKH KVLFLQVFLL PSIIVAAIQN CAWDYHVTKV LAEKFDYN-V Porcine_epidemi SSLLMFTLKH KTLFFQVFLI PALIVTSCIN LAFDVEVYNY LAEHFDYH-V Porcine_transmi STVFVSGIKH KMLFFMSFVL PSVILVTAHN LFWDFSYYES LQSIVENTNT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat YVPSVEYTYT DEVIYGMLLL IGMVFVTLRS INHDLFSFIM FVGRVISVVS Bovine_enteric_ YVPSVEYTYT DEVIYGMLLL IGMVFVTLRS INHDLFSFIM FVGRVISVVS Bovine_CoV YVPSVEYTYT DEVIYGMLLL IGMVFVTLRS INHDLFSFIM FVGRVISVVS Murine_HepV FVPAVDYTYM DEVLYGVVLL VAMVFVTMRS INHDVFSTMF LVGRLVSLVS SARS_CoV ADTSLSGYRL KDCVMYASAL VLLILMTART VYDDAARRVW TLMNVITLVY Human_CoV SVMQMDIQGF VNIFICLFVA LLH---TWRF AKERCTHWCT YLFSLIAVLY Porcine_epidemi SLMGFNAQGL VNIFVCFVVT ILHGTYTWRF FNTPAS-SVT YVVALLTAAY Porcine_transmi MFLPVDMQGV MLTVFCFIVF VTYSVRFFTC KQSWFSLAVT TILVIFNMVK Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LWYMG----- -SNLEEEILL MLASLFGTYT WT---TALSM AAAKVIAKWV Bovine_enteric_ LWYMG----- -SNLEEEILL MLASLFGTYT WT---TALSM AAAKVIAKWV Bovine_CoV LWYMG----- -SNLEEEILL MLASLFGTYT WT---TALSM AAAKVIAKWV Murine_HepV MWYFG----- -ANLEEEVLL FLTSLFGTYT WT---TMLSL ATAKVIAKWL SARS_CoV KVYYG----- -NALDQAISM WALVISVTSN YSGVVTTIMF LARAIVFVCV Human_CoV TA-------- --LYSYDYVS LLVMLLCAIS NEWYIGAIIF RICRFG-VAF Porcine_epidemi NY-------- --FYASDILS CAMTLFASVT GNWFVGAVCY KVAVY--MAL Porcine_transmi IFGTSDEPWT ENQIAFCFVN MLTMIVSLTT KDWMVVIASY RIAYYIVVCV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat AVNVLYFTDI PQIKIVLVCY LFIGYIISCY WGLFSLMNSL FRMPLGVYNY Bovine_enteric_ AVNVLYFTDI PQIKIVLVCY LFIGYIISCY WGLFSLMNSL FRMPLGVYNY Bovine_CoV AVNVLYFTDI PQIKIVLVCY LFIGYIISCY WGLFSLMNSL FRMPLGVYNY Murine_HepV AVNVLYFTDI PQIKLVLLSY LCIGYVCCCY WGVLSLLNSI FRMPLGVYNY SARS_CoV EYYPLLFITG NTLQCIMLVY CFLGYCCCCY FGLFCLLNRY FRLTLGVYDY Human_CoV LP-VEYVSYF DGVKTVLLFY MLLGFVSCMY YGLLYWINRF CKCTLGVYDF Porcine_epidemi RF-PTFVAIF GDIKSVMFCY LVLGYFTCCF YGILYWFNRF FKVSVGVYDY Porcine_transmi MP-SAFVSDF GFMKCISIVY MACGYLFCCY YGILYWVNRF TCMTCGVYQF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KISVQELRYM NANGLRPPKN SFEALMLNFK LLGIGGVPII EVSQFQSKLT Bovine_enteric_ KISVQELRYM NANGLRPPKN SFEALMLNFK LLGIGGVPII EVSQFQSKLT Bovine_CoV KISVQELRYM NANGLRPPKN SFEALMLNFK LLGIGGVPII EVSQFQSKLT Murine_HepV KISVQELRYM NANGLRPPRN SFEALMLNFK LLGIGGVPVI EVSQIQSRLT SARS_CoV LVSTQEFRYM NSQGLLPPKS SIDAFKLNIK LLGIGGKPCI KVATVQSKMS Human_CoV CVSPAEFKYM VANGLNAPNG PFDALFLSFK LMGIGGPRTI KVSTVQSKLT Porcine_epidemi TVSAAEFKYM VANGLRAPTG TLDSLLLSAK LIGIGGERNI KISSVQSKLT Porcine_transmi TVSAAELKYM TANNLSAPKN AYDAMILSAK LIGVGGKRNI KISTVQSKLT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DVKCANVVLL NCLQHLHVAS NSKLWQYCST LHNEILATSD LGVAFEKLAQ Bovine_enteric_ DVKCANVVLL NCLQHLHVAS NSKLWQYCST LHNEILATSD LGVAFEKLAQ Bovine_CoV DVKCANGGLL NCLQHLHVAS NSKLWQYCST LHNEILATSD LGVAFEKLAQ Murine_HepV DVKCANVVLL NCLQHLHIAS NSKLWQYCST LHNEILATSD LSVAFDKLAQ SARS_CoV DVKCTSVVLL SVLQQLRVES SSKLWAQCVQ LHNDILLAKD TTEAFEKMVS Human_CoV DLKCTNVVLM GILSNMNIAS NSKEWAYCVE MHNKINLCDD PETAQELLLA Porcine_epidemi DIKCSNVVLL GCLSSMNVSA NSTEWAYCVD LHNKINLCND PEKAQEMLLA Porcine_transmi EMKCTNVVLL GLLSKMHVES NSKEWNYCVG LHNEINLCDD PEIVLEKLLA Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LLIVLFANPA AVDSKCLTSI EEVCDDYAKD NTVLQALQSE FVNMASFVEY Bovine_enteric_ LLIVLFANPA AVDSKCLTSI EEVCDDYAKD NTVLQALQSE FVNMASFVEY Bovine_CoV LLIVLFANPA AVDSKCLTSI EEVCDDYAKD NTVLQALQSE FVNMASFVEY Murine_HepV LLVVLFANPA AVDSKCLASI EEVSDDYVRD NTVLQALQSE FVNMASFVEY SARS_CoV LLSVLLSMQG AVD------I NRLCEEMLDN RATLQAIASE FSSLPSYAAY Human_CoV LLAFFLSKHS DFG------L GDLVDSYFEN DSILQSVASS FVGMPSFVAY Porcine_epidemi LLAFFLSKNS AFG------L DDLLESYFND NSMLQSVAST YVGLPSYVIY Porcine_transmi LIAFFLSKHN TCD------L SELIESYFEN TTILQSVASA YAALPSWIAL Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat EVAKKNLDEA RSSGSANQQQ LKQLEKACNI AKSAYERDRA VARKLERMAD Bovine_enteric_ EVAKKNLDEA RSSGSANQQQ LKQLEKACNI AKSAYERDRA VARKLERMAD Bovine_CoV EVAKKNLDEA CSSGSANQQQ LKQLEKACNI AKSAYERDRA VARKLERMAD Murine_HepV ELAKKNLDEA KASGSANQQQ IKQLEKACNI AKSAYERDRA VARKLERMAD SARS_CoV ATAQEAYEQA VANGDS-EVV LKKLKKSLNV AKSEFDRDAA MQRKLEKMAD Human_CoV ETARQEYENA VANGSSPQ-I IKQLKKAMNV AKAEFDRESS VQKKINRMAE Porcine_epidemi ENARQQYEDA VNNGSPPQ-L VKQLRHAMNV AKSEFDREAS TQRKLDRMAE Porcine_transmi EKARADLEEA KKNDVSPQ-I LKQLTKAFNI AKSDFEREAS VQKKLDKMAE Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LALTNMYKEA RINDKKSKVV SALQTMLFSM VRKLDNQALN SILDNAVKGC Bovine_enteric_ LALTNMYKEA RINDKKSKVV SALQTMLFSM VRKLDNQALN SILDNAVKGC Bovine_CoV LALTNMYKEA RINDKKSKVV SALQTMLFSM VRKLDNQALN SILDNAVKGC Murine_HepV LALTNMYKEA RINDKKSKVV SALQTMLFSM VRKLDNQALN SILDNAVKGC SARS_CoV QAMTQMYKQA RSEDKRAKVT SAMQTMLFTM LRKLDNDALN NIINNARDGC Human_CoV QAAAAMYKEA RAVNRKSKVV SAMHSLLFGM LRRLDMSSVD TILNMARNGV Porcine_epidemi QAAAQMYKEA RAVNRKSKVV SAMHSLLFGM LRRLDMSSVD TILNLAKDGV Porcine_transmi QAAASMYKEA RAVDRKSKIV SAMHSLLFGM LKKLDMSSVN TIIDQARNGV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VPLNAIPSLA ANTLTIIVPD KSVYDQVVDN VYVTYAGNVW QIQTIQDSDG Bovine_enteric_ VPLNAIPSLA ANTLTIIVPD KSVYDQVVDN VYVTYAGNVW QIQTIQDSDG Bovine_CoV VPLNAIPSLA ANTLTIIVPD KSVYDQVVDN VYVTYAGNVW QIQTIQDSDG Murine_HepV VPLNAIPPLT SNTLTIIVPD KQVFDQVVDN VYVTYAPNVW HIQSIQDADG SARS_CoV VPLNIIPLTT AAKLMVVVPD YGTYKNTCDG NTFTYASALW EIQQVVDADS Human_CoV VPLSVIPATS AARLVVVVPD HDSFVKMMVD GFVHYAGVVW TLQEVKDNDG Porcine_epidemi VPLSVIPAVS ATKLNIVTSD IDSYNRIQRE GCVHYAGTIW NIIDIKDNDG Porcine_transmi LPLSIIPAAS ATRLVVITPS LEVFSKIRQE NNVHYAGAIW TIVEVKDANG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat TNKQLNEISD DCN----WPL VIIANRHNEV SATVLQNNEL MPAKLKTQVV Bovine_enteric_ TNKQLNEISD DCN----WPL VIIANRHNEV SATVLQNNEL MPAKLKTQVV Bovine_CoV TNKQLHEISD DCN----WPL VIIANRHNEV SATVLQNNEL MPAKLKTQVV Murine_HepV AVKQLNEIDV NST----WPL VISANRHNEV STVVLQNNEL MPQKLRTQVV SARS_CoV KIVQLSEINM DNSPNLAWPL IVTALRAN-- SAVKLQNNEL SPVALRQMSC Human_CoV KNVHLKDVTK ENQEILVWPL ILTCER---- -VVKLQNNEI MPGKMKVKAT Porcine_epidemi KVVHVKEVTA QNAESLSWPL VLGCER---- -IVKLQNNEI IPGKLKQRSI Porcine_transmi SHVHLKEVTA ANELNLTWPL SITCER---- -TTKLQNNEI MPGKLKERAV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat NSGPDQTCNT PT--QCYYNN SNNGKIVYAI LSDVDGLKYT KILKDDGN-F Bovine_enteric_ NSGPDQTCNT PT--QCYYNN SNNGKIVYAI LSDVDGLKYT KILKDDGN-F Bovine_CoV NSGPDQTCNT PT--QCYYNN SYNGKIVYAI LSDVDGLKYT KILKDDGN-F Murine_HepV NSGSDMNCNI PT--QCYYNT TGTGKIVYAI LSDCDGLKYT KIVKEDGN-C SARS_CoV AAGTTQTACT DDNALAYYNN SKGGRFVLAL LSDHQDLKWA RFPKSDGTGT Human_CoV KGEG--DGGI TSEGNALYNN EGGRAFMYAY VTTKPGMKYV KWEHDSG--V Porcine_epidemi KAEG--DG-I VGEGKALYNN EGGRTFMYAF ISDKPDLRVV KWEFDGG--C Porcine_transmi RASATLDGEA FGSGKALMAS ESGKSFMYAF IASDNNLKYV KWESNND--I Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VVLELDPPCK FTVQDVKGLK IKYLYFVKGC NTLARGWVVG TISSTVRLQA Bovine_enteric_ VVLELDPPCK FTVQDVKGLK IKYLYFVKGC NTLARGWVVG TISSTVRLQA Bovine_CoV VVLELDPPCK FTVQDVKGLK IKYLYFVKGC NTLARGWVVG TISSTVRLQA Murine_HepV VVLELDPPCK FSVQDVKGLK IKYLYFVKGC NTLARGWVVG TLSSTVRLQA SARS_CoV IYTELEPPCR FVTDTPKGPK VKYLYFIKGL NNLNRGMVLG SLAATVRLQA Human_CoV VTVELEPPCR FVIDTPTGPQ IKYLYFVKNL NNLRRGAVLG YIGATVRLQA Porcine_epidemi NTIELEPPRK FLVDSPNGAQ IKYLYFVRNL NTLRRGAVLG YIGATVRLQA Porcine_transmi IPIELEAPLR FYVDGANGPE VKYLYFVKNL NTLRRGAVLG YIGATVRLQA Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GTATEYASNS SILSLCAFSV DPKKTYLDFI QQGGTPIANC VKMLCDHAGT Bovine_enteric_ GTATEYASNS SILSLCAFSV DPKKTYLDFI QQGGTPIANC VKMLCDHAGT Bovine_CoV GTATEYASNS SILSLCAFSV DPKKTYLDFI QQGGTPIANC VKMLCDHAGT Murine_HepV GTATEYASNS AILSLCAFSV DPKKTYLDYI QQGGVPVTNC VKMLCDHAGT SARS_CoV GNATEVPANS TVLSFCAFAV DPAKAYKDYL ASGGQPITNC VKMLCTHTGT Human_CoV GKQTEFVSNS HLLTHCSFAV DPAAAYLDAV KQGAKPVGNC VKMLTNGSGS Porcine_epidemi GKQTEQAINS SLLTLCAFAV DPAKTYIDAV KSGHKPVGNC VKMLANGSGN Porcine_transmi GKPTEHPSNS SLLTLCAFSP DPAKAYVDAV KRGMQPVNNC VKMLSNGAGN Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GMAITVKPDA TTNQDSYGGA SVCIYCRARV EHPDVDGLCK LRGKFVQVP- Bovine_enteric_ GMAITVKPDA TTNQDSYGGA SVCIYCRARV EHPDVDGLCK LRGKFVQVP- Bovine_CoV GMAITVKPDA TTSQDSYGGA SVCIYCRARV EHPDVDGLCK LRGKFVQVP- Murine_HepV GMAITIKPEA TTNQDSYGGA SVCIYCRSRV EHPDVDGLCK LRGKFVQVP- SARS_CoV GQAITVTPEA NMDQESFGGA SCCLYCRCHI DHPNPKGFCD LKGKYVQIPT Human_CoV GQAITCTIDS NTTQDTYGGA SVCIYCRAHV AHPTMDGFCQ YKGKWVQVP- Porcine_epidemi GQAVTNGVEA STNQDSYGGA SVCLYCRAHV EHPSMDGFCR LKGKYVQVP- Porcine_transmi GMAVTNGVEA NTQQDSYGGA SVCIYCRCHV EHPAIDGLCR YKGKFVQIP- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VGIKDPVSYV LTHDVCQVCG FWRDGSCSCV ST-DTTVQSK DTN--FLNRV Bovine_enteric_ VGIKDPVSYV LTHDVCQVCG FWRDGSCSCV ST-DTTVQSK DTN--FLNRV Bovine_CoV VGIKDPVSYV LTHDVCQVCG FWRDGSCSCV ST-DTTVQSK DTN--FLNRV Murine_HepV LGIKDPVSYV LTHDVCQVCG FWRDGSCSCV GT-GSQFQSK DTN--FLNRV SARS_CoV TCANDPVGFT LRNTVCTVCG MWKGYGCSCD QLREPLMQSA DAST-FLNRV Human_CoV IGTNDPIRFC LENTVCKVCG CWLNHGCTCD RT---AIQS- -FDNSYLNRV Porcine_epidemi LGTVDPIRFV LENDVCKVCG CWLSNGCTCD RS---IMQS- -TDMAYLNRV Porcine_transmi TGTQDPIRFC IENEVCVVCG CWLNNGCMCD RT---SMQSF TVDQSYLNRV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat RGTSVDARLV PCASGLSTDV QLRAFDICNA SVAGIGLHLK VNCCRFQRVD Bovine_enteric_ RGTSVDARLV PCASGLSTDV QLRAFDICNA SVAGIGLHLK VNCCRFQRVD Bovine_CoV RGTSVDARLV PCASGLSTDV QLRAFDICNA SVAGIGLHLK VNCCRFQRVD Murine_HepV RGTSVNARLV PCASGLDTDV QLRAFDICNA NRAGIGLYYK VNCFRFQRVD SARS_CoV CGVSA-ARLT PCGTGTSTDV VYRAFDIYNE KVAGFAKFLK TNCCRFQEKD Human_CoV RGSSA-ARLE PCN-GTDIDY CVRAFDVYNK DASFIGKNLK SNCVRFKNVD Porcine_epidemi RGSSA-ARLE PCN-GTDTQH VYRAFDIYNK DVACLGKFLK VNCVRLKNLD Porcine_transmi RGSSA-ARLE PCN-GTDPDH VSRAFDIYNK DVACIGKFLK TNCSRFRNLD Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ENGDKLDQFF VVKRTDLTIY NREMECYERV KDCKFVAEHD FFTFDVEGSR Bovine_enteric_ ENGDKLDQFF VVKRTDLTIY NREMECYERV KDCKFVAEHD FFTFDVEGSR Bovine_CoV ENGDKLDQFF VVKRTDLTIY NREMECYERV KDCKFVAEHD FFTFDVEGSR Murine_HepV EEGNKLDKFF VVKRTNLEVY NKEKECYELT KDCGVVAEHE FFTFDVEGSR SARS_CoV EEGNLLDSYF VVKRHTMSNY QHEETIYNLV KDCPAVAVHD FFKFRVDGDM Human_CoV KD----DAFY IVKRCIKSVM DHEQSMYNLL KGCNAVAKHD FFTWHEGRTI Porcine_epidemi KH----DAFY VVKRCTKSAM EHEQSIYSRL EKCGAIAEHD FFTWKDGRAI Porcine_transmi KH----DAYY IVKRCTKTVM DHEQVCYNDL KDSGAVAEHD FFTYKEGRCE Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VPHIVRKDLT KYTMLDLCYA LRHFDRNDCM LLCDILSIYA GCEQSYFTKK Bovine_enteric_ VPHIVRKDLT KYTMLDLCYA LRHFDRNDCM LLCDILSIYA GCEQSYFTKK Bovine_CoV VPHIVRKDLT KYTMLDLCYA LRHFDRNDCM LLCDILSIYA GCEQSYFTKK Murine_HepV VPHIVRKDLS KFTMLDLCYA LRHFDRNDCS TLKEILLTYA ECDESYFQKK SARS_CoV VPHISRQRLT KYTMADLVYA LRHFDEGNCD TLKEILVTYN CCDDDYFNKK Human_CoV YGNVSRQDLT KYTMMDLCFA LRNFDEKDCE VFKEILVLTG CCSTDYFEMK Porcine_epidemi YGNVCRKDLT EYTMMDLCYA LRNFDENNCD VLKSILIKVG ACEESYFNNK Porcine_transmi FGNVARRNLT KYTMMDLCYA IRNFDEKNCE VLKEILVTVG ACTEEFFENK Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DWYDFVENPD IINVYKKLGP IFNRALVSAT EFADKLVEVG LVGILTLDNQ Bovine_enteric_ DWYDFVENPD IINVYKKLGP IFNRALVSAT EFADKLVEVG LVGILTLDNQ Bovine_CoV DWYDFVENPD IINVYKKLGP IFNRALVSAT EFADKLVEVG LVGILTLDNQ Murine_HepV DWYDFVENPD IINVYKKLGP IFNRALLNTA NFADTLVEAG LVGVLTLDNQ SARS_CoV DWYDFVENPD ILRVYANLGE RVRQSLLKTV QFCDAMRDAG IVGVLTLDNQ Human_CoV NWFDPIENED IHRVYAALGK VVANAMLKCV AFCDEMVLKG VVGVLTLDNQ Porcine_epidemi VWFDPVENED IHRVYALLGT IVARAMLKCV KFCDAMVEQG IVGVVTLDNQ Porcine_transmi DWFDPVENEA IHEVYAKLGP IVANAMLKCV AFCDAIVEKG YIGVITLDNQ Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DLNGKWYDFG DYVIAAPGCG VAIADSYYSY MMPMLTMCHA LDCELYVNN- Bovine_enteric_ DLNGKWYDFG DYVIAAPGCG VAIADSYYSY MMPMLTMCHA LDCELYVNN- Bovine_CoV DLNGKWYDFG DYVIAAPGCG VAIADSYYSY MMPMLTMCHA LDCELYVNN- Murine_HepV DLYGQWYDFG DFVKTVPCCG VAVADSYYSY MMPMLTMCHA LDSELFVNG- SARS_CoV DLNGNWYDFG DFVQVAPGCG VPIVDSYYSL LMPILTLTRA LAAESHMDAD Human_CoV DLNGNFYDFG DFVLCPPGMG IPYCTSYYSY MMPVMGMTNC LASECFMKSD Porcine_epidemi DLNGDFYDFG DFTCSIKGMG VPICTSYYSY MMPVMGMTNC LASECFVKSD Porcine_transmi DLNGNFYDFG DFVKTAPGFG CACVTSYYSY MMPLMGMTSC LESENFVKSD Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ----AYRLFD LVQYDFTDYK LELFNKYFKH WSMPYHPNTV DCQDDRCIIH Bovine_enteric_ ----AYRLFD LVQYDFTDYK LELFNKYFKH WSMPYHPNTV DCQDDRCIIH Bovine_CoV ----AYRLFD LVQYDFTDYK LELFNKYFKH WSMPYHPNTV DCQDDRCIIH Murine_HepV ----TYREFD LVQYDFTDFK LELFNKYFKH WSMTYHPNTS ECEDDRCIIH SARS_CoV LA-KPLIKWD LLKYDFTEER LCLFDRYFKY WDQTYHPNCI NCLDDRCILH Human_CoV IFGQDFKTFD LLKYDFTEHK EVLFNKYFKY WGQDYHPDCV DCHDEMCILH Porcine_epidemi IFGEDFKSYD LLEYDFTEHK TALFNKYFKY WGLQYHPNCV DCSDEQCIVH Porcine_transmi IYGSDYKQYD LLAYDFTEHK EYLFQKYFKY WDRTYHPNCS DCTSDECIIH Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat CANFNILFSM VLPNTCFGPL VRQIFVDGVP FVVSIGYHYK ELGIVMNMDV Bovine_enteric_ CANFNILFSM VLPNTCFGPL VRQIFVDGVP FVVSIGYHYK ELGIVMNMDV Bovine_CoV CANFNILFSM VLPNTCFGPL VRQIFVDGVP FVVSIGYHYK ELGIVMNMDV Murine_HepV CANFNILFSM VLPKTCFGPL VRQIFVDGVP FVVSIGYHYK ELGVVMNMDV SARS_CoV CANFNVLFST VFPPTSFGPL VRKIFVDGVP FVVSTGYHFR ELGVVHNQDV Human_CoV CSNFNTLFAT TIPNTAFGPL CRKVFIDGVP VVATAGYHFK QLGLVWNKDV Porcine_epidemi CANFNTLFST TIPITAFGPL CRKCWIDGVP LVTTAGYHFK QLGIVWNNDL Porcine_transmi CANFNTLFSM TIPMTAFGPL VRKVHIDGVP VVVTAGYHFK QLGIVWNLDV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DTHRYRLSLK DLLLYAADPA LHVASASALY DLRTCCFSVA AITSGVKFQT Bovine_enteric_ DTHRYRLSLK DLLLYAADPA LHVASASALY DLRTCCFSVA AITSGVKFQT Bovine_CoV DTHRYRLSLK DLLLYAADPA LHVASASALY DLRTCCFSVA AITSGVKFQT Murine_HepV DTHRYRLSLK DLLLYAADPA LHVASASALL DLRTCCFSVA AITSGVKFQT SARS_CoV NLHSSRLSFK ELLVYAADPA MHAASGNLLL DKRTTCFSVA ALTNNVAFQT Human_CoV NTHSTRLTIT ELLQFVTDPT LIVASSPALV DKRTVCFSVA ALSTGLTSQT Porcine_epidemi NLHSSRLSIN ELLQFCSDPA LLIASSPALV DQRTVCFSVA ALGTGMTNQT Porcine_transmi KLDTMKLSMT DLLRFVTDPT LLVASSPALL DQRTVCFSIA ALSTGITYQT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VKPGNFNQDF YDFILSKGLL KEGSSVDLKH FFFTQDGNAA ITDYNYYKYN Bovine_enteric_ VKPGNFNQDF YDFILSKGLL KEGSSVDLKH FFFTQDGNAA ITDYNYYKYN Bovine_CoV VKPGNFNQDF YDFILSKGLL KEGSSVDLKH FFFTQDGNAA ITDYNYYKYN Murine_HepV VKPGNFNQDF YEFILSKGLL KEGSSVDLKH FFFTQDGNAA ITDYNYYKYN SARS_CoV VKPGNFNKDF YDFAVSKGFF KEGSSVELKH FFFAQDGNAA ISDYDYYRYN Human_CoV VKPGHFNKEF YDFLRSQGFF DEGSELTLKH FFFTQKGDAA IKDFDYYRYN Porcine_epidemi VKPGHFNKEF YDFLLEQGFF SEGSELTLKH FFFAQKVDAA VKDFDYYRYN Porcine_transmi VKPGHFNKDF YDFITERGFF EEGSELTLKH FFFAQGGEAA MTDFNYYRYN Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LPTMVDIKQL LFVLEVVYKY FEIYDGGCIP ASQVIVNNYD KSAGYPFNKF Bovine_enteric_ LPTMVDIKQL LFVLEVVYKY FEIYDGGCIP ASQVIVNNYD KSAGYPFNKF Bovine_CoV LPTMVDIKQL LFVLEVVYKY FEIYDGGCIP AAQVIVNNYD KSAGYPFNKF Murine_HepV LPTMVDIKQL LFVVEVVNKY FEIYEGGCIP ATQVIVNNYD KSAGYPFNKF SARS_CoV LPTMCDIRQL LFVVEVVDKY FDCYDGGCIN ANQVIVNNLD KSAGFPFNKW Human_CoV RPTMLDIGQA RVAYQVAARY FDCYEGGCIT SREVVVTNLN KSAGWPLNKF Porcine_epidemi RPTVLDICQA RVVYQIVQRY FDIYEGGCIT AKEVVVTNLN KSAGYPLNKF Porcine_transmi RVTVLDICQA QFVYKIVGKY FECYDGGCIN AREVVVTNYD KSAGYPLNKF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GKARLYYEAL SFEEQDEIYA YTKRNVLPTL TQMNLKYAIS AKNRARTVAG Bovine_enteric_ GKARLYYEAL SFEEQDEIYA YTKRNVLPTL TQMNLKYAIS AKNRARTVAG Bovine_CoV GKARLYYEAL SFEEQDEIYA YTKRNVLPTL TQMNLKYAIS AKNRARTVAG Murine_HepV GKARLYYEAL SFEEQDEIYA YTKRNVLPTL TQMNLKYAIS AKNRARTVAG SARS_CoV GKARLYYDSM SYEDQDALFA YTKRNVIPTI TQMNLKYAIS AKNRARTVAG Human_CoV GKAGLYYESI SYEEQDAIFS LTKRNILPTM TQLNLKYAIS GKERARTVGG Porcine_epidemi GKAGLYYESL SYEEQDELYA YTKRNILPTM TQLNLKYAIS GKERARTVGG Porcine_transmi GKARLYYETL SYEEQDALFA LTKRNVLPTM TQMNLKYAIS GKARARTVGG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VSILSTMTGR MFHQKCLKSI AATRGVPVVI GTTKFYGGWD DMLRRLIKDV Bovine_enteric_ VSILSTMTGR MFHQKCLKSI AATRGVPVVI GTTKFYGGWD DMLRRLIKDV Bovine_CoV VSILSTMTGR MFHQKCLKSI AATRGVPVVI GTTKFYGGWD DMLRRLIKDV Murine_HepV VSILSTMTGR MFHQKCLKSI AATRGVPVVI GTTKFYGGWD DMLRRLIKDV SARS_CoV VSICSTMTNR QFHQKLLKSI AATRGATVVI GTSKFYGGWH NMLKTVYSDV Human_CoV VSLLATMTTR QFHQKCLKSI VATRNATVVI GTTKFYGGWD NMLKNLMADV Porcine_epidemi VSLLSTMTTR QYHQKHLKSI VNTRGASVVI GTTKFYGGWD NMLKNLIDGV Porcine_transmi VSLLSTMTTR QYHQKHLKSI AATRNATVVI GSTKFYGGWD NMLKNLMRDV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DNPVLMGWDY PKCDRAMPNI LRIVSSLVLA RKHEACCSQS DRFYRLANEC Bovine_enteric_ DNPVLMGWDY PKCDRAMPNI LRIVSSLVLA RKHEACCSQS DRFYRLANEC Bovine_CoV DNPVLMGWDY PKCDRAMPNI LRIVSSLVLA RKHEACCSQS DRFYRLANEC Murine_HepV DSPVLMGWDY PKCDRAMPNI LRIVSSLVLA RKHDSCCSHT DRFYRLANEC SARS_CoV ETPHLMGWDY PKCDRAMPNM LRIMASLVLA RKHNTCCNLS HRFYRLANEC Human_CoV DDPKLMGWDY PKCDRAMPSM IRMLSAMILG SKHVTCCTAS DKFYRLSNEL Porcine_epidemi ENPCLMGWDY PKCDRALPNM IRMISAMILG SKHTTCCSST DRFFRLCNEL Porcine_transmi DNGCLMGWDY PKCDRALPNM IRMASAMILG SKHVGCCTHN DRFYRLSNEL Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat AQVLSEIVMC GGCYYVKPGG TSSGDATTAF ANSVFNICQA VSANVCALMS Bovine_enteric_ AQVLSEIVMC GGCYYVKPGG TSSGDATTAF ANSVFNICQA VSANVCALMS Bovine_CoV AQVLSEIVMC GGCYYVKPGG TSSGDATTAF ANSVFNICQA VSANVCALMS Murine_HepV AQVLGEIVMC GGCYYVKPGG TSSGDATTAF ANSVFNICQA VSANVCSLMA SARS_CoV AQVLSEMVMC GGSLYVKPGG TSSGDATTAY ANSVFNICQA VTANVNALLS Human_CoV AQVLTEVVYS NGGFYFKPGG TTSGDATTAY ANSVFNIFQA VSSNINCVLS Porcine_epidemi AQVLTEVVYS NGGFYLKPGG TTSGDATTAY ANSVFNIFQA VSANVNKLLS Porcine_transmi AQVLTEVVHC TGGFYFKPGG TTSGDGTTAY ANSAFNIFQA VSANVNKLLG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat CNGNKIEDLS IRALQKRLYS HVYRSDMVDS TFVTEYYEFL NKHFSMMILS Bovine_enteric_ CNGNKIEDLS IRALQKRLYS HVYRSDMVDS TFVTEYYEFL NKHFSMMILS Bovine_CoV CNGNKIEDLS IRALQKRLYS HVYRSDMVDS TFVTEYYEFL NKHFSMMILS Murine_HepV CNGHKIEDLS IRELQKRLYS NVYRADHVDP AFVSEYYEFL NKHFSMIILS SARS_CoV TDGNKIADKY VRNLQHRLYE CLYRNRDVDH EFVDEFYAYL RKHFSMMILS Human_CoV VNSSNCNNFN VKKLQRQLYD NCYRNSNVDE SFVDDFYGYL QKHFSMMILS Porcine_epidemi VDSNVCHNLE VKQLQRKLYE CCYRSTIVDD QFVVEYYGYL RKHFSMMILS Porcine_transmi VDSNACNNVT VKSIQRKIYD NCYRSSSIDE EFVVEYFSYL RKHFSMMILS Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DDGVVCYNSD YASKGYIANI SAFQQVLYYQ NNVFMSESKC WVENDINNGP Bovine_enteric_ DDGVVCYNSD YASKGYIANI SAFQQVLYYQ NNVFMSESKC WVENDINNGP Bovine_CoV DDGVVCYNSD YASKGYIANI SAFQQVLYYQ NNVFMSESKC WVENDINNGP Murine_HepV DDGVVCYNSE FASKGYIANI SDFQQVLYYQ NNVFMSEAKC WVETDIEKGP SARS_CoV DDAVVCYNSN YAAQGLVASI KNFKAVLYYQ NNVFMSEAKC WTETDLTKGP Human_CoV DDSVVCYNKT YAGLGYIADI SAFKATLYYQ NGVFMSTAKC WTEEDLSIGP Porcine_epidemi DDGVVCYNND YASLGYVADL NAFKAVLYYQ NNVFMSASKC WIEPDINKGP Porcine_transmi DDGVVCYNKD YADLGYVADI NAFKATLYYQ NNVFMSTSKC WVEPDLSVGP Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat HEFCSQHTML VKMDGDDVYL PYPDPSRILG AGCFVDDLLK TDSVLLIERF Bovine_enteric_ HEFCSQHTML VKMDGDDVYL PYPDPSRILG AGCFVDDLLK TDSVLLIERF Bovine_CoV HEFCSQHTML VKMDGDDVYL PYPVPSRILG AGCFVDDLLK TDSVLLIERF Murine_HepV HEFCSQHTML VKMDGDEVYL PYPDPSRILG AGCFVDDLLK TDSVLLIERF SARS_CoV HEFCSQHTML VKQGDDYVYL PYPDPSRILG AGCFVDDIVK TDGTLMIERF Human_CoV HEFCSQHTMQ IVDENGKYYL PYPDPSRIIS AGVFVDDITK TDAVILLERY Porcine_epidemi HEFCSQHTMQ IVDKEGTYYL PYPDPSRILS AGVFVDDVVK TDAVVLLERY Porcine_transmi HEFCSQHTLQ IVGPDGDYYL PYPDPSRILS AGVFVDDIVK TDNVIMLERY Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VSLAIDAYPL VYHENEEYQK VFRVYLEYIK KLYNDLGNQI LDSYSVILST Bovine_enteric_ VSLAIDAYPL VYHENEEYQK VFRVYLEYIK KLYNDLGNQI LDSYSVILST Bovine_CoV VSLAIDAYPL VYHENEEYQK VFRVYLEYIK KLYNELGNQI LDSYSVILST Murine_HepV VSLAIDAYPL VYHENPEYQN VFRVYLEYIK KLYNDLGNQI LDSISVILST SARS_CoV VSLAIDAYPL TKHPNQEYAD VFHLYLQYIR KLHDELTGHM LDMYSVMLTN Human_CoV VSLAIDAYPL SKHPKPEYRK VFYALLDWVK HLNKTLNEGV LESFSVTLLD Porcine_epidemi VSLAIDAYPL SKHENPEYKK VFYVLLDWVK HLYKTLNAGV LESFSVTLLE Porcine_transmi VSLAIDAYPL TKHPKPAYQK VFYTLLDWVK HLQKNLNAGV LDSFSVTMLE Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat CDGQKFTDES FYKNMYLRSA VMQSVGACVV CSSQTSLRCG SCIRKPLLCC Bovine_enteric_ CDGQKFTDES FYKNMYLRSA VMQSVGACVV CSSQTSLRCG SCIRKPLLCC Bovine_CoV CDGQKFTDES FYKNMYLRSA VMQSVGACVV CSSQTSLRCG SCIRKPLLCC Murine_HepV CDGQKFTDET FYKNMYLRSA VMQSVGACVV CSSQTSLRCG SCIRKPLLCC SARS_CoV DNTSRYWEPE FYEAMYTPHT VLQAVGACVL CNSQTSLRCG ACIRRPFLCC Human_CoV EHESKFWDES FYASMYEKST VLQAAGLCVV CGSQTVLRCG DCLRRPMLCT Porcine_epidemi DSTAKFWDES FYANMYEKSA VLQSAGLCVV CGSQTVLRCG DCLRRPMLCT Porcine_transmi EGQDKFWSEE FYASLYEKST VLQAAGMCVV CGSQTVLRCG DCLRRPLLCT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KCCYDHVMAT DHKYVLSVSP YVCNAPGCDV NDVTKLYLGG MSYYCEDHKP Bovine_enteric_ KCCYDHVMAT DHKYVLSVSP YVCNAPGCDV NDVTKLYLGG MSYYCEDHKP Bovine_CoV KCCYDHVMAT DHKYVLSVSP YVCNAPGCDV NDVTKLYLGG MSYYCEDHKP Murine_HepV KCAYDHVMST DHKYVLSVSP YVCNSPGCDV NDVTKLYLGG MSYYCEAHKP SARS_CoV KCCYDHVIST SHKLVLSVNP YVCNAPGCDV TDVTQLYLGG MSYYCKSHKP Human_CoV KCAYDHVFGT DHKFILAITP YVCNTSGCNV NDVTKLYLGG LNYYCVDHKP Porcine_epidemi KCAYDHVIGT THKFILAITP YVCCASDCGV NDVTKLYLGG LSYWCHEHKP Porcine_transmi KCAYDHVMGT KHKFIMSITP YVCSFNGCNV NDVTKLFLGG LSYYCMNHKP Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat QYSFKLVMNG MVFGLYKQSC TGSPYIDDFN RIASCKWTDV DDYILANECT Bovine_enteric_ QYSFKLVMNG MVFGLYKQSC TGSPYIDDFN RIASCKWTDV DDYILANECT Bovine_CoV QYSFKLVMNG MVFGLYKQSC TGSPYIDDFN RIASCKWTDV DDYILANECT Murine_HepV QYSFKLVMNG MVFGLYKQSC TGSPYIEDFN KIASCKWTEV DDYVLANECT SARS_CoV PISFPLCANG QVFGLYKNTC VGSDNVTDFN AIATCDWTNA GDYILANTCT Human_CoV HLSFPLCSAG NVFGLYKSSA LGSMDIDVFN KLSTSDWSDI RDYKLANDAK Porcine_epidemi RLAFPLCSAG NVFGLYKNSA TGSPDVEDFN RIATSDWTDV SDYRLANDVK Porcine_transmi QLSFPLCANG NVFGLYKSSA VGSEAVEDFN KLAVSDWTNV EDYKLANNVK Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ERLKLFAAET QKATEEAFKQ SYASATIQEI VSERELILSW EIGKVKPPLN Bovine_enteric_ ERLKLFAAET QKATEEAFKQ SYASATIQEI VSERELILSW EIGKVKPPLN Bovine_CoV ERLKLFAAET QKATEEAFKQ SYASATIQEI VSERELILSW EIGKVKPPLN Murine_HepV ERLKLFAAET QKATEEAFKQ CYASATIREI VSDRELILSW EIGKVRPPLN SARS_CoV ERLKLFAAET LKATEETFKL SYGIATVREV LSDRELHLSW EVGKPRPPLN Human_CoV ESLRLFAAET VKAKEESVKS SYAYATLKEI VGPKELLLLW ESGKAKPPLN Porcine_epidemi DSLRLFAAET IKAKEESVKS SYACATLHEV VGPKELLLKW EVGRPKPPLN Porcine_transmi ESLKIFAAET VKAKEESVKS EYAYAVLKEV IGPKEIVLQW EASKTKPPLN Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KNYVFTGYHF TKNGKTVLGE YVFDKSELTN -GVYYRATTT YKLSVGDVFV Bovine_enteric_ KNYVFTGYHF TKNGKTVLGE YVFDKSELTN -GVYYRATTT YKLSVGDVFV Bovine_CoV KNYVFTGYHF TKNGKTVLGE YVFDKSELTN -GVYYRATTT YKLSVGDVFV Murine_HepV KNYVFTGYHF TNNGKTVLGE YVFDKSELTN -GVYYRATTT YKLSVGDVFI SARS_CoV RNYVFTGYRV TKNSKVQIGE YTFEKGDYGD -AVVYRGTTT YKLNVGDYFV Human_CoV RNSVFTCFQI TKDSKFQVGE FVFEKVDYGS DTVTYKSTAT TKLVPGMLFI Porcine_epidemi RNSVFTCYHI TKNTKFQIGE FVFEKAEYDN DAVTYKTTAT TKLVPGMVFV Porcine_transmi RNSVFTCFQI SKDTKIQLGE FVFEQSEYGS DSVYYKSTST YKLTPGMIFV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LTSHSVANLS APTLVPQENY SSIR-FASVY SVLETFQNNV VNYQHIGMKR Bovine_enteric_ LTSHSVANLS APTLVPQENY SSIR-FASVY SVLETFQNNV VNYQHIGMKR Bovine_CoV LTSHSVANLS APTLVPQENY SSIR-FASVY SVLETFQNNV VNYQHIGMKR Murine_HepV LTSHAVSSLS APTLVPQENY TSVR-FASAY SVPETFQNNV PNYQHIGIKR SARS_CoV LTSHTVMPLS APTLVPQEHY VRITGLYPTL NISDEFSSNV ANYQKVGMQK Human_CoV LTSHNVAPLR APTMANQEKY STIYKLHPSF NVSDAYANLV PYYQLIGKQR Porcine_epidemi LTSHNVQPLR APTIANQERY STIHKLHPAF NIPEAYSSLV PYYQLIGKQK Porcine_transmi LTSHNVSPLK APILVNQEKY NTISKLYPVF NIAEAYNTLV PYYQMIGKQK Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat YCTVQGPPGT GKSHLAIGLA VYYCTARVVY TAASHAAVDA LCEKAYKFLN Bovine_enteric_ YCTVQGPPGT GKSHLAIGLA VYYCTARVVY TAASHAAVDA LCEKAYKFLN Bovine_CoV YCTVQGPPGT GKSHLAIGLA VYYCTARVVY TAASHAAVDA LCEKAYKFLN Murine_HepV YCTVQGPPGT GKSHLAIGHA VYYCTARVVY TAASHAAVDA LCEKAHKFLN SARS_CoV YSTLQGPPGT GKSHFAIGLA LYYPSARIVY TACSHAAVDA LCEKALKYLP Human_CoV ITTIQGPPGS GKSHCSIGIG VYYPGARIVF TACSHAAVDS LCAKAVTAYS Porcine_epidemi ITTIQGPPGS GKSHCVIGLG LYYPGARIVF TACSHAAVDS LCVKASTAYS Porcine_transmi FTTIQGPPGS GKSHCVIGLG LYYPQARIVY TACSHAAVDA LCEKAAKNFN Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat INDCTRIVPA KVRVECYDKF KINDTTRKYV FTTINALPEM VTDIVVVDEV Bovine_enteric_ INDCTRIVPA KVRVECYDKF KINDTTRKYV FTTINALPEM VTDIVVVDEV Bovine_CoV INDCTRIVPA KVRVECYDKF KINDTTRKYV FTTINALPEM VTDIVVVDEV Murine_HepV INDCARIVPA KLRVDCYDKF NVNDTTRKYV FTTINALPEL VTDIIVVDEV SARS_CoV IDKCSRIIPA RARVECFDKF KVNSTLEQYV FCTVNALPET TADIVVFDEI Human_CoV VDKCTRIIPA RARVECYSGF KPNNNSAQYV FSTVNALPEV NADIVVVDEV Porcine_epidemi NDKCSRIIPQ RARVECYDGF KSNNTSAQYL FSTVNALPEC NADIVVVDEV Porcine_transmi VDRCSRIIPQ RIRVDCYTGF KPNNTNAQYL FCTVNALPEA SCDIVVVDEV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat SMLTNYELSV INARIRAKHY VYIGDPAQLP APRVLLSKGT LEPKYFNTVT Bovine_enteric_ SMLTNYELSV INARIRAKHY VYIGDPAQLP APRVLLSKGT LEPKYFNTVT Bovine_CoV SMLTNYELSV INARIRAKHY VYIGDPAQLP APRVLLSKGT LEPKYFNTVT Murine_HepV SMLTNYELSV INSRVRAKHY VYIGDPAQLP APRVLLNKGT LEPRYFNSVT SARS_CoV SMATNYDLSV VNARLRAKHY VYIGDPAQLP APRTLLTKGT LEPEYFNSVC Human_CoV SMCTNYDLSV INQRISYKHI VYVGDPQQLP APRVLISKGV MEPIDYNVVT Porcine_epidemi SMCTNYDLSV INQRISYRHV VYVGDPQQLP APRVMISRGT LEPKDYNVVT Porcine_transmi SMCTNYDLSV INSRLSYKHI VYVGDPQQLP APRTLINKGV LQPQDYNVVT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KLMCCLGPDI FLGTCYRCPK EIVDTVSALV YENKLKAKNE SSSLCFKVYY Bovine_enteric_ KLMCCLGPDI FLGTCYRCPK EIVDTVSALV YENKLKAKNE SSSLCFKVYY Bovine_CoV KLMCCLGPDI FLGTCYRCPK EIVDTVSALV YENKLKAKNE SSSLCFKVYY Murine_HepV KLMCCLGPDI FLGTCYRCPK EIVDTVSALV YNNKLKAKND NSAMCFKVYY SARS_CoV RLMKTIGPDM FLGTCRRCPA EIVDTVSALV YDNKLKAHKD KSAQCFKMFY Human_CoV QRMCAIGPDV FLHKCYRCPA EIVNTVSELV YENKFVPVKE ASKQCFKIFE Porcine_epidemi QRMCALKPDV FLHKCYRCPA EIVRTVSEMV YENQFIPVHP DSKQCFKIFC Porcine_transmi KRMCTLGPDV FLHKCYRCPA EIVKTVSALV YENKFVPVNP ESKQCFKMFV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KGVTTHESSS AVNMQQIYLI NKFLKANPLW HKAVFISPYN SQNFAAKRVL Bovine_enteric_ KGVTTHESSS AVNMQQIYLI NKFLKANPLW HKAVFISPYN SQNFAAKRVL Bovine_CoV KGVTTHESSS AVNMQQIYLI NKFLKANPLW HKAVFISPYN SQNFAAKRVL Murine_HepV KGQTTHESSS AVNMQQIHLI SKLLKANPSW SNAVFISPYN SQNYVAKRVL SARS_CoV KGVITHDVSS AINRPQIGVV REFLTRNPAW RKAVFISPYN SQNAVASKIL Human_CoV RGSVQVDNGS SINRRQLDVV KRFIHKNSTW SKAVFISPYN SQNYVAARLL Porcine_epidemi KGNVQVDNGS SINRRQLDVV RMFLAKNPRW SKAVFISPYN SQNYVASRLL Porcine_transmi KGQVQIESNS SINNKQLEVV KAFLAHNPKW RKAVFISPYN SQNYVARRLL Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GLQTQTVDSA QGSEYDYVIY SQTAETAHSV NVNRFNVAIT RAKKGILCVM Bovine_enteric_ GLQTQTVDSA QGSEYDYVIY SQTAETAHSV NVNRFNVAIT RAKKGILCVM Bovine_CoV GLQTQTVDSA QGSEYDYVIY SQTAETAHSV NVNRFNVAIT RAKKGILCVM Murine_HepV GLQTQTADSA QGSAYDFVIY SQTAQTAHSV NVNRFNVAIT RAKKGILCVM SARS_CoV GLPTQTVDSS QGSEYDYVIF TQTTETAHSC NVNRFNVAIT RAKIGILCIM Human_CoV GLQTQTVDSA QGSEYDYVIF AQTSDTAHAC NANRFNVAIT RAKKGIFCIM Porcine_epidemi GLQIQTVDSS QGSEYDYVIY AQTSDTAHAS NVNRFNVAIT RAKKGILCIM Porcine_transmi GLQTQTVDSA QGSEYDYVIY TQTSDTQHAT NVNRFNVAIT RAKVGILCIM Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat SNMQLFEALQ FTTLTLDKVP QAVETRVQCS TNLFKDCSKS YSGYHPAHAP Bovine_enteric_ SNMQLFEALQ FTTLTLDKVP QAVETRVQCS TNLFKDCSKS YSGYHPAHAP Bovine_CoV SNMQLFEALQ FTTLTVDKVP QAVETRVQCS TNLFKDCSKS YSGYHPAHAP Murine_HepV SSMQLIGVFN FTTLTLDKIN ---NPRLQCT TNLFKDCSKS YVGIPP--CA SARS_CoV SDRDLYDKLQ FTSLEIPRRN -VATLQAENV TGLFKDCSKI ITGLHPTQAP Human_CoV SDRTLFDALK FFEITMTDLQ ---SESS--- CGLFKDCARN PIDLPPSHAT Porcine_epidemi CDRSLFDLLK FFELKLSDLQ ---ANEG--- CGLFKDCSRG DDLLPPSHAN Porcine_transmi CDRTMYENLD FYELKDSKIG ---LQAKPET CGLFKDCSKS EQYIPPAYAT Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat SFLAVDDKYK ATGDLAVCLG IGDSAVTYSR LISLMGFKLD VTLDGYCKLF Bovine_enteric_ SFLAVDDKYK ATGDLAVCLG IGDSAVTYSR LISLMGFKLD VTLDGYCKLF Bovine_CoV SFLAVDDKYK ATGDLAVCLG IGDSAVTYSR LISLMGFKLD VTLDGYCKLF Murine_HepV FLLAVDDKYK VSGNLAVCLN VADSAVTYSR LISLMGFKLD LTLDGYCKLF SARS_CoV THLSVDIKFK TEG-LCVDIP GIPKDMTYRR LISMMGFKMN YQVNGYPNMF Human_CoV TYLSLSDRFK TSGDLAVQIG NNN-VCTYEH VISYMGFRFD VSMPGSHSLF Porcine_epidemi TFMSLADNFK TDQYLAVQIG VNG-PIKYEH VISFMGFRFD INIPNHHTLF Porcine_transmi TYMSLSDNFK TSDGLAVNIG -TK-DVKYAN VISYMGFRFE ANIPGYHTLF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ITKEEAVKRV RAWVGFDAEG AHATRDSIGT NFPLQLGFST GIDFVVEATG Bovine_enteric_ ITKEEAVKRV RAWVGFDAEG AHATRDSIGT NFPLQLGFST GIDFVVEATG Bovine_CoV ITKEEAVKRV RAWVGFDAEG AHATRDSIGT NFPLQLGFST GIDFVVEATG Murine_HepV ITRDEAIKRV RAWVGFDAEG AHATRDSIGT NFPLQLGFST GIDFVVEATG SARS_CoV ITREEAIRHV RAWIGFDVEG CHATRDAVGT NLPLQLGFST GVNLVAVPTG Human_CoV CTRDFAMRHV RGWLGMDVEG AHVTGDNVGT NVPLQVGFSN GVDFVAQPEG Porcine_epidemi CTRDFAMRNV RGWLGFDVEG AHVVGSNVGT NVPLQLGFSN GVDFVVRPEG Porcine_transmi CTRDFAMRNV RAWLGFDVEG AHVCGDNVGT NVPLQLGFSN GVDFVVQTEG Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LFADRDGYSF KKAVAKAPPG EQFKHLIPLM TRGQRWDVVR PRIVQMFADH Bovine_enteric_ LFADRDGYSF KKAVAKAPPG EQFKHLIPLM TRGQRWDVVR PRIVQMFADH Bovine_CoV LFADRDGYSF KKAVAKAPPG EQFKHLIPLM TRGQRWDVVR PRIVQMFADH Murine_HepV MFAERDGYVF KKAAARAPPG EQFKHLVPLM SRGQKWDVVR IRIVQMLSDH SARS_CoV YVDTENNTEF TRVNAKPPPG DQFKHLIPLM YKGLPWNVVR IKIVQMLSDT Human_CoV CVLTNTGSVV KPVRARAPPG EQFTHIVPLL RKGQPWSVLR KRIVQMIADF Porcine_epidemi CVVTESGDYI KPVRARAPPG EQFAHLLPLL KRGQPWDVVR KRIVQMCSDY Porcine_transmi CVITEKGNSI EVVKARAPPG EQFAHLIPLM RKGQPWHIVR RRIVQMVCDY Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LIDLSDCVVL VTWAANFELT CLRYFAKVGR EISCNVCTKR ATAYNSRTGY Bovine_enteric_ LIDLSDCVVL VTWAANFELT CLRYFAKVGR EISCNVCTKR ATAYNSRTGY Bovine_CoV LIDLSDCVVL VTWAANFELT CLRYFAKVGR EISCNVSTKR ATAYNSRTGY Murine_HepV LVDLADSVVL VTWAASFELT CLRYFAKVGK EVVCSVCNKR ATCFNSRTGY SARS_CoV LKGLSDRVVF VLWAHGFELT SMKYFVKIGP ERTCCLCDKR ATCFSTSSDT Human_CoV LAGSSDVLVF VLWAGGLELT TMRYFVKIGA VKHC-QCGTV ATCYNSVSND Porcine_epidemi LANLSDILIF VLWAGGLELT TMRYFVKIGP SKSC-DCGKV ATCYNSALHT Porcine_transmi FDGLSDILIF VLWAGGLELT TMRYFVKIGR PQKC-ECGKS ATCYSSSQSV Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat YGCWRHSVTC DYLYNPLIVD IQQWGYIGSL SSNHDLYCSV HKGAHVASSD Bovine_enteric_ YGCWRHSVTC DYLYNPLIVD IQQWGYIGSL SSNHDLYCSV HKGAHVASSD Bovine_CoV YGCWRHSVTC DYLYNPLIVD IQQWGYIGSL SSNHDLYCSV HKGAHVASSD Murine_HepV YGCWRHSYSC DYLYNPLIVD IQQWGYTGSL TSNHDPICSV HKGAHVASSD SARS_CoV YACWNHSVGF DYVYNPFMID VQQWGFTGNL QSNHDQHCQV HGNAHVASCD Human_CoV YCCFKHALGC DYVYNPYVID IQQWGYVGSL STNHHAICNV HRNEHVASGD Porcine_epidemi YCCFKHALGC DYLYNPYCID IQQWGYKGSL SLNHHEHCNV HRNEHVASGD Porcine_transmi YACFKHALGC DYLYNPYCID IQQWGYTGSL SMNHHEVCNI HRNEHVASGD Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat AIMTRCLAVY DCFCNNINWN VEYPIISNEL SINTSCRVLQ RVMLKAAMLC Bovine_enteric_ AIMTRCLAVY DCFCNNINWN VEYPIISNEL SINTSCRVLQ RVMLKAAMLC Bovine_CoV AIMTRCLAVY DCFCNNINWN VEYPIISNEL SINTSCRVLQ RVMLKAAMLC Murine_HepV AIMTRCLAVH DCFCKSVNWN LEYPIISNEV SVNTSCRLLQ RVMFRAAMLC SARS_CoV AIMTRCLAVH ECFVKRVDWS VEYPIIGDEL RVNSACRKVQ HMVVKSALLA Human_CoV AIMTRCLAVY DCFVKNVDWS ITYPMIANEN AINKGGRTVQ SHIMRAAIKL Porcine_epidemi AIMTRCLAIH DCFVKNVDWS ITYPFIGNEA VINKSGRIVQ SHTMRSVLKL Porcine_transmi AIMTRCLAIH DCFVKRVDWS IVYPFIDNEE KINKAGRIVQ SHVMKAALKI Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat NRYTLCYDIG NPKAIACV-- KDFDFKFYDA QPIVKS---V KTLLYSFEAH Bovine_enteric_ NRYTLCYDIG NPKAIACV-- KDFDFKFYDA QPIVKS---V KTLLYSFEAH Bovine_CoV NRYTLCYDIG NPKAIACV-- KDFDFKFYDA QPIVKS---V KTLLYFFEAH Murine_HepV NRYDVCYDIG NPKGLACV-- KGYDFKFYDA SPVVKS---V KQFVYKYEAH SARS_CoV DKFPVLHDIG NPKAIKCVPQ AEVEWKFYDA QPCSDKAYKI EELFYSYATH Human_CoV YNPKAIHDIG NPKGIRCA-V TDAKWYCYDK NPINSN---V KTLEYDYMTH Porcine_epidemi YNPKAIYDIG NPKGIRCA-V TDAKWFCFDK NPTNSN---V KTLEYDYITH Porcine_transmi FNPAAIHDVG NPKGIRCA-T TPIPWFCYDR DPINNN---V RCLDYDYMVH Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat KDSFKDGLCM FWNCNVDKYP PNAVVCRFDT RVLNNLNLPG CNGGSLYVNK Bovine_enteric_ KDSFKDGLCM FWNCNVDKYP PNAVVCRFDT RVLNNLNLPG CNGGSLYVNK Bovine_CoV KDSFKDGLCM FWNCNVDKYP PNAVVCRFDT RVLNNLNLPG CNGGSLYVNK Murine_HepV KDQFLDGLCM FWNCNVDKYP ANAVVCRFDT RVLSKLNLPG CNGGSLYVNK SARS_CoV HDKFTDGVCL FWNCNVDRYP ANAIVCRFDT RVLSNLNLPG CDGGSLYVNK Human_CoV G--QMDGLCL FWNCNVDMYP EFSIVCRFDT RTRSTLNLEG VNGGSLYVNN Porcine_epidemi G--QFDGLCL FWNCNVDMYP EFSVVCRFDT RCRSPLNLEG CNGGSLYVNN Porcine_transmi G--QMNGLML FWNCNVDMYP EFSIVCRFDT RTRSKLSLEG CNGGALYVNN Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat HAFHTKPFSR AAFEHLKPMP FFYYSDTPCV YMDGMDAKQV DYVPLKSATC Bovine_enteric_ HAFHTKPFSR AAFEHLKPMP FFYYSDTPCV YMDGMDAKQV DYVPLKSATC Bovine_CoV HAFHTKPFSR AAFEHLKPMP FFYYSDTPCV YMDGMDAKQV DYVPLKSATC Murine_HepV HAFHTNPFTR AAFENLKPMP FFYYSDTPCV YMEGMESKQV DYVPLRSATC SARS_CoV HAFHTPAFDK SAFTNLKQLP FFYYSDSPCE SHGKQVVSDI DYVPLKSATC Human_CoV HAFHTPAYDK RAMAKLKPAP FFYYDDGSCE VVH----DQV NYVPLRATNC Porcine_epidemi HAFHTPAFDK RAFAKLKPMP FFFYDDTECD KLQ----DSI NYVPLRASNC Porcine_transmi HAFHTPAYDR RAFAKLKPMP FFYYDDSNCE LVD----GQP NYVPLKSNVC Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ITRCNLGGAV CLKHAEEYRE YLESYNTATT AGFTFWVYKT FDFYNLWNTF Bovine_enteric_ ITRCNLGGAV CLKHAEEYRE YLESYNTATT AGFTFWVYKT FDFYNLWNTF Bovine_CoV ITRCNLGGAV CLKHAEEYRE YLESYNTATT AGFTFWVYKT FDFYNLWNTF Murine_HepV ITRCNLGGAV CLKHAEEYRE YLESYNTATT AGFTFWVYKT FDFYNLWNTF SARS_CoV ITRCNLGGAV CRHHANEYRQ YLDAYNMMIS AGFSLWIYKQ FDTYNLWNTF Human_CoV ITKCNIGGAV CSKHANLYRA YVESYNIFTQ AGFNIWVPTT FDCYNLWQTF Porcine_epidemi ITKCNVGGAV CSKHCAMYHS YVNAYNTFTS AGFTIWVPTS FDTYNLWQTF Porcine_transmi ITKCNIGGAV CKKHAALYRA YVEDYNIFMQ AGFTIWCPQN FDTYMLWHGF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat TK---LQSLE NVVYNLVKTG HYTGQAGEMP CAIINDKVVA KIDKEDVVIF Bovine_enteric_ TK---LQSLE NVVYNLVKTG HYTGQAGEMP CAIINDKVVA KIDKEDVVIF Bovine_CoV TK---LQSLE NVVYNLVKTG HYTGQAGEMP CAIINDKVVA KIDKEDVVIF Murine_HepV TR---LQSLE NVVYNLVNAG HFDGRAGELP CAVIGEKVIA KIQNEDVVVF SARS_CoV TR---LQSLE NVAYNVVNKG HFDGHAGEAP VSIINNAVYT KVDGIDVEIF Human_CoV TEVN-LQGLE NIAFNVVNKG SFVGADGELP VAISGDKVFV RDGNTDNLVF Porcine_epidemi SN-N-LQGLE NIAFNVLKKG SFVGDEGELP VAVVNDKVLV RDGTVDTLVF Porcine_transmi VNSKALQSLE NVAFNVVKKG AFTGLKGDLP TAVIADKIMV RDGPTDKCIF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat INNTTYPTNV AVELFAKRSI RHHPELKLFR NLNIDVCWKH VIWDYARESI Bovine_enteric_ INNTTYPTNV AVELFAKRSI RHHPELKLFR NLNIDVCWKH VIWDYARESI Bovine_CoV INNTTYPTNV AVELFAKRSI RHHPELKLFR NLNIDVCWKH VIWDYARESI Murine_HepV KNNTPFPTNV AVELFAERSI RPHPELKLFR SSNIHVCWNH VLWDYAKDSV SARS_CoV ENKTTLPVNV AFELWAKRNI KPVPEIKILN NLGVDIAANT VIWDYKREAP Human_CoV VNKTSLPTNI AFELFAKRKV GLTPPLSILK NLGVVATYKF VLWDYEAERP Porcine_epidemi TNKTSLPTNV AFELYAKRKV GLTPPITILR NLGVVCTSKC VIWDYEAERP Porcine_transmi TNKTSLPTNV AFELYAKRKL GLTPPLTILR NLGVVATYKF VLWDYEAERP Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat FCSNTYGVCM YTDLK----- -FIDKLNVLF DGRDNGALEA FKRSNNGVYI Bovine_enteric_ FCSNTYGVCM YTDLK----- -FIDKLNVLF DGRDNGALEA FKRSNNGVYI Bovine_CoV FCSNTYGVCM YTDLK----- -LIDKLNVLF DGRDNGALEA FKRSNNGVYI Murine_HepV FCSSTYKVCK YTDLQ----- -CIESLNVLF DGRDNGALEA FKKCRNGVYI SARS_CoV AHVSTIGVCT MTDIAKKPTE SACSSLTVLF DGRVEGQVDL FRNARNGVLI Human_CoV LTSFTKSVCG YTDFA----- ---EDVCTCY DNSIQGSYER FTLSTNAVLF Porcine_epidemi LTTFTKDVCK YTDFE----- ---GDVCTLF DNSIVGSLER FSMTQNAVLM Porcine_transmi FSNFTKQVCS YTDLD----- ---SEVVTCF DNSIAGSFER FTTTRDAVLI Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat STTKVKS--- -LSMIKGPPR AELNGVVVDK VGDT-----D CVFYFAVRKE Bovine_enteric_ STTKVKS--- -LSMIKGPPR AELNGVVVDK VGDT-----D CVFYFAVRKE Bovine_CoV STTKVKS--- -LSMIRGPPR AELNGVVVDK VGDT-----D CVFYFAVRKE Murine_HepV NTTKIKS--- -LSMIKGPQR ADLNGVVVEK VGDS-----D VEFWFAMRRD SARS_CoV TEGSVKG--- -LTPSKGPAQ ASVNGVTLIG ES-V-----K TQFNYFKKVD Human_CoV SATAVKTGGK SLPAIK-LNF GMLNGNAIAT VKSEDGNIKN INWFVYVRKD Porcine_epidemi SLTAVKK--- -LTGIK-LTY GYLNGVPVNT HED-----KP FTWYIYTRKN Porcine_transmi SNNAVKG--- -LSAIK-LQY GLLNDLPVST VGN-----KP VTWYIYVRKN Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GQDVIFSQFD SLRVSSNQSP QGNLGSNEPG NVGGNDALAT STIFTQSRVI Bovine_enteric_ GQDVIFSQFD SLRVSSNQSP QGNLGSNEPG NVGGNDALAT STIFTQSRVI Bovine_CoV GQDVIFSQFD SLRVSSNQSP QGNLGSNEPG NVGGNDALAT STIFTQSRVI Murine_HepV GDDVIFSRTG SLEPSHYRSP QGNPGGNRVG DLSGNEALAR GTIFTQSRFL SARS_CoV G---IIQQLP ---------- ---------- ---------- ETYFTQSRDL Human_CoV GKPVDHYDG- ---------- ---------- ---------- --FYTQGRNL Porcine_epidemi GKFEDYPDG- ---------- ---------- ---------- --YFTQGRTT Porcine_transmi GEYVEQIDS- ---------- ---------- ---------- --YYTQGRTF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat SSFTCRTDME KDFIALDQDL FIQKYGLEDY AFEHIVYGNF NQKIIGGLHL Bovine_enteric_ SSFTCRTDME KDFIALDQDL FIQKYGLEDY AFEHIVYGNF NQKIIGGLHL Bovine_CoV SSFTCRTDME KDFIALDQDV FIQKYGLEDY AFEHIVYGNF NQKIIGGLHL Murine_HepV SSFSPRSEME KDFMDLDEDV FIAKYSLQDY AFEHVVYGSF NQKIIGGLHL SARS_CoV EDFKPRSQME TDFLELAMDE FIQRYKLEGY AFEHIVYGDF SHGQLGGLHL Human_CoV QDFLPRSTME EDFLNMDIGV FIQKYGLEDF NFEHVVYGDV SKTTLGGLHL Porcine_epidemi ADFSPRSDME KDFLSMDMGL FINKYGLEDY GFEHVVYGDV SKTTLGGLHL Porcine_transmi ETFKPRSTME EDFLSMDTTL FIQKYGLEDY GFEHVVFGDV SKTTIGGMHL Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LIGLYRRQQT SNLVIQEFVS -YDSSIHSYF ITDEKSGGSK SVCTVIDILL Bovine_enteric_ LIGLYRRQQT SNLVIQEFVS -YDSSIHSYF ITDEKSGGSK SVCTVIDILL Bovine_CoV LIGLYRRQQT SNLVIQEFVS -YDSSIHSYF ITDEKSGGSK SVCTVIDILL Murine_HepV LIGLARRPKK SNLVIQEFVP -YDSSIHSYF ITDENSGSSE SVCTVIDLLL SARS_CoV MIGLAKRSQD SPLKLEDFIP -MDSTVKNYF ITDAQTGSSK CVCSVIDLLL Human_CoV LISQVRLSKM GILKAEEFVA ASDITLKCCT VTYLNDPSSK TVCTYMDLLL Porcine_epidemi LISQVRLACM GVLKIDEFVS SNDSTLKSCT VTYADNPSSK MVCTYMDLLL Porcine_transmi LISQVRLAKM GLFSVQEFMN NSDSTLKSCC ITYADDPSSK NVCTYMDILL Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DDFVALVKSL NLNCVSKVVN VNVDFKDFQF MLWCNDEKVM TFYPRLQAAS Bovine_enteric_ DDFVALVKSL NLNCVSKVVN VNVDFKDFQF MLWCNDEKVM TFYPRLQAAS Bovine_CoV DDFVALVKSL NLNCVSKVVN VNVDFKDFQF MLWCNDEKVM TFYPRLQAAS Murine_HepV DDFVDIVKSL NLKCVSKVVN VNVDFKDFQF MLWCNEEKVM TFYPRLQAAA SARS_CoV DDFVEIIKSQ DLSVISKVVK VTIDYAEISF MLWCKDGHVE TFYPKLQASQ Human_CoV DDFVSVLKSL DLTVVSKVHE VIIDNKPWRW MLWCKDNAVA TFYPQLQSA- Porcine_epidemi DDFVSILKSL DLSVVSKVHE VMVDCKMWRW MLWCKDHKLQ TFYPQLQAS- Porcine_transmi DDFVTIIKSL DLNVVSKVVD VIVDCKAWRW MLWCENSHIK TFYPQLQSA- Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat DWKPGYSMPV LYKYLNSPME RVSLWNYGKP VTLPTGCMMN VAKYTQLCQY Bovine_enteric_ DWKPGYSMPV LYKYLNSPME RVSLWNYGKP VTLPTGCMMN VAKYTQLCQY Bovine_CoV DWKPGYSMPV LYKYLNSPME RVSLWNYGKP VTLPTGCMMN VAKYTQLCQY Murine_HepV DWKPGYVMPV LYKYLESPME RVNLWNYGKP ITLPTGCMMN VAKYTQLCQY SARS_CoV AWQPGVAMPN LYKMQRMLLE KCDLQNYGEN AVIPKGIMMN VAKYTQLCQY Human_CoV EWKCGYSMPG IYKTQRMCLE PCNLYNYGAG LKLPSGIMFN VVKYTQLCQY Porcine_epidemi EWKCGYSMPS IYKIQRMCLE PCNLYNYGAG VKLPDGIMFN VVKYTQLCQY Porcine_transmi EWNPGYSMPT LYKIQRMCLE RCNLYNYGAQ VKLPDGITTN VVKYTQLCQY Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat LNTTTLAVPV NMRVLHLGAG SEKGVAPGSA VLRQWLPAG- ---------T Bovine_enteric_ LNTTTLAVPV NMRVLHLGAG SEKGVAPGSA VLRQWLPAG- ---------T Bovine_CoV LNTTTLAVPV NTRVLHLGAG SEKGVAPGSA VLRQWLPAGT ILRQWLPAGT Murine_HepV LSTTTLAVPA NMRVLHLGAG SDKGVAPGSA VLRQWLPSG- ---------S SARS_CoV LNTLTLAVPY NMRVIHFGAG SDKGVAPGTA VLRQWLPTG- ---------T Human_CoV FNSTTLCVPH NMRVLHLGAG SDYGVAPGTA VLKRWLPHD- ---------A Porcine_epidemi LNSTTMCVPH HMRVLHLGAG SDKGVAPGTA VLRRWLPLD- ---------A Porcine_transmi LNTTTLCVPH KMRVLHLGAA GASGVAPGST VLRRWLPDD- ---------A Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat ILVDNDLYPF VSDSVATYFG DCITLPFDCQ WDLIISDMYD PITKNIGEYN Bovine_enteric_ ILVDNDLYPF VSDSVATYFG DCITLPFDCQ WDLIISDMYD PITKNIGEYN Bovine_CoV ILVHNDLYPF VSDSVATYFG DCITLPFDCQ WDLIISDMYD -LLLDIGVHV Murine_HepV ILVDNDMNPF VSDSVASYYG NCITLPFDCQ WDLIISDMYD PLTKNIGEYN SARS_CoV LLVDSDLNDF VSDADSTLIG DCATVHTANK WDLIISDMYD PRTKHVTKEN Human_CoV IVVDNDVVDY VSDADFSVTG DCATVYLEDK FDLLISDMYD GRTKAIDGEN Porcine_epidemi IIVDNDSVDY VSDADYSVTG DCSTLYLSDK FDLVISDMYD GKIKSCDGEN Porcine_transmi ILVDNDLRDY VSDADFSVTG DCTSLYIEDK FDLLVSDLYD GSTKSIDGEN Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat VSKDGFFTYI CHMIRDKLAL GGSVAIKITE FSWNAELYKL MGYFAFWTVF Bovine_enteric_ VSKDGFFTYI CHMIRDKLAL GGSVAIKITE FSWNAELYKL MGYFAFWTVF Bovine_CoV VRCS---YIH CHMIRDKLAL GGSVAIKITE FSWNAELYKL MGYFAFWTVF Murine_HepV VSKDGFFTYL CHLIRDKLAL GGSVAIKITE FSWNAELYSL MGKFAFWTIF SARS_CoV DSKEGFFTYL CGFIKQKLAL GGSIAVKITE HSWNADLYKL MGHFSWWTAF Human_CoV VSKEGFFTYI NGFICEKLAI GGSIAIKVTE YSWNKKLYEL VQRFSFWTMF Porcine_epidemi VSKEGFFPYI NGVITEKLAL GGTVAIKVTE FSWNKKLYEL IQKFEYWTMF Porcine_transmi TSKDGFFTYI NGFIKEKLSL GGSVAIKITE FSWNKDLYEL IQRFEYWTVF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat CTNANASSSE GFLIGINYLG --KPKVEIDG NVMHANYLFW RNSTVWNGGA Bovine_enteric_ CTNANASSSE GFLIGINYLG --KPKVEIDG NVMHANYLFW RNSTVWNGGA Bovine_CoV CTNANASSSE GFLIGINYLG --KPKVEIDG NVMHAIICFG ---------- Murine_HepV CTNVNASSSE GFLIGINWLN --RTRNEIDG KTMHANYLFW RNSTMWNGGA SARS_CoV VTNVNASSSE AFLIGANYLG --KPKEQIDG YTMHANYIFW RNTNPIQLSS Human_CoV CTSVNTSSSE AFVVGINYLG DFAQGPFIDG NIIHANYVFW RNSTVMSLSY Porcine_epidemi CTSVNTSSSE AFLIGVHYLG DFASGAVIDG NTMHANYIFW RNSTIMTMSY Porcine_transmi CTSVNTSSSE GFLIGINYLG PYCDKAIVDG NIMHANYIFW RNSTIMALSH Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat YSLFDMAKFP LKLAGTAVIN LRADQINDMV YSLLEKGKLL VRDTNKEVFV Bovine_enteric_ YSLFDMAKFP LKLAGTAVIN LRADQINDMV YSLLEKGKLL VRDTNKEVFV Bovine_CoV ---------E IPQFGTGVLI ACLIWLNSRL SWLVMP---- ---------- Murine_HepV YSLFDMTKFP LKAAGTAVVS LKPDQINDLV LSLIEKGKLL VRDTRKEVFV SARS_CoV YSLFDMSKFP LKLRGTAVMS LKENQINDMI YSLLEKGRLI IRENNRVVVS Human_CoV NSVLDLSKFN CKHKATVVVQ LKDSDINEMV LSLVRSGKLL VRGNGKCLSF Porcine_epidemi NSVLDLSKFN CKHKATVVVN LKDSSISDVV LGLLKNGKLL VRNNDAICGF Porcine_transmi NSVLDTPKFK CRCNNALIVN LKEKELNEMV IGLLRKGKLL IRNNGKLLNF Feline_infectio ---------- ---------- ---------- ---------- ---------- Bovine_respirat GDSLVNVI- Bovine_enteric_ GDSLVNVI- Bovine_CoV --------- Murine_HepV GDSLVNVK- SARS_CoV SDILVNN-- Human_CoV SNHLVSTK- Porcine_epidemi SNHLVNVNK Porcine_transmi GNHFVNTP- Feline_infectio ---------