Your query has been submitted, please wait for results...
BLASTN 1.4.11 [24-Nov-97] [Build 24-Nov-97]
Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W.
Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol.
Biol. 215:403-10.
Notice: this program and its default parameter settings are optimized
to find nearly identical sequences rapidly. To identify weak similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.
Query= tmpseq_1
(2940 letters)
Database: Non-redundant GenBank+EMBL+DDBJ+PDB sequences
341,396 sequences; 692,601,867 total letters.
Searching..................................................done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
gb|J02263|MLM124 Moloney murine sarcoma virus clone... 7183 0.0 1
emb|V01185|REMSVX Genome of murine sarcoma virus (st... 7165 0.0 1
gb|AF011892|AF011892 Moloney murine sarcoma virus gag-m... 5474 0.0 1
dbj|D88622|D88622 Bicistronic retroviral vector 4936 0.0 3
gb|U00220|U00220 Human immunodeficiency virus type ... 4936 0.0 3
gb|M77239|SYNRRV Cloning vector pLXSH from Moloney ... 4936 0.0 3
gb|M63653|SYNMMLPLN6 Moloney murine leukemia virus retr... 4936 0.0 3
gb|M28246|SYNMMLPLN2 Moloney murine leukemia virus retr... 4936 0.0 3
gb|M28248|SYNMMLPLN4 Moloney murine leukemia virus retr... 4936 0.0 3
gb|M64754|SYNMOV2 Moloney murine leukemia virus retr... 4936 0.0 2
gb|M28245|SYNMMLPLN1 Moloney murine leukemia virus retr... 4936 0.0 3
gb|M28247|SYNMMLPLN3 Moloney murine leukemia virus retr... 4936 0.0 3
gb|M64753|SYNMOV1 Moloney murine leukemia virus retr... 4936 0.0 4
gb|AF033813|AF033813 Moloney murine sarcoma virus, comp... 4782 0.0 1
gb|J02266|MLMPROCG Moloney murine sarcoma virus (prov... 4397 0.0 2
gb|M96854|MMSAAX Moloney murine sarcoma virus gene ... 4038 0.0 3
emb|AJ224004|RVPSF1NBH Retroviral vector plasmid pSF1 (NB... 2471 0.0 8
gb|AF010170|AF010170 Plasmid pAMS with hybrid amphotrop... 2456 0.0 5
emb|AJ224005|RVPSF1PSN Retroviral vector plasmid pSF1 (PS... 2451 0.0 8
emb|V01541|REAMLV Abelson murine leukemia virus geno... 2420 0.0 6
gb|J02009|MLAPRO Abelson murine leukemia virus (pro... 2420 0.0 6
gb|U93512|CVU93512 Cloning vector CA1, complete sequence 2385 0.0 5
emb|Z93724|ASZ93724 Murine retrovirus shuttle vector p... 2095 0.0 8
emb|Z22761|REVPSFF Retroviral expression vector pSFF ... 1786 0.0 6
gb|J02255|MLMCG Moloney murine leukemia virus, com... 2447 5.1e-305 3
gb|AF033812|AF033812 Abelson murine leukemia virus, com... 2420 1.4e-301 3
dbj|AB003468|AB003468 Cloning vector pAP3neo DNA, comple... 2105 1.6e-294 2
gb|M99566|SYNSCOS sCos cloning vector SfiI containin... 2095 2.8e-294 2
gb|M99569|SYNPWE15 sCos cloning vector SfiI containin... 2095 2.9e-294 2
gb|M83237|SYNRSV5NEO cDNA expression vector RSV.5(neo). 2095 3.2e-294 2
gb|L36555|SYNTCRC Cloning vector murine T-cell recep... 2095 3.5e-294 2
gb|U02434|XXU02434 Cloning vector pSV2neo, complete s... 2095 3.6e-294 2
gb|AF047654|AF047654 Expression vector pSTAR, complete ... 2095 5.1e-294 2
gb|U02432|XXU02432 Cloning vector pMAMneo, complete s... 2095 5.3e-294 2
gb|U02430|XXU02430 Cloning vector pMAMneoBlue, comple... 2095 5.3e-294 2
gb|U02431|XXU02431 Cloning vector pMAMneo-CAT, comple... 2095 5.8e-294 2
gb|U02448|U02448 Cloning vector pMAMneo-LUC, comple... 2095 6.5e-294 2
gb|U13189|CVU13189 Cloning vector pYACneo, complete s... 2095 1.0e-293 2
gb|U89930|CVU89930 Cloning vector pTet-On, complete s... 2095 1.0e-293 2
gb|U89929|CVU89929 Cloning vector pTet-Off, complete ... 2095 1.0e-293 2
gb|U52109|CVU52109 Cloning vector pLK-neo DNA. 2095 5.3e-292 2
gb|U19276|XXU19276 Cloning vector pGFP-1 green fluore... 2061 9.6e-290 2
gb|U55761|CVU55761 Cloning vector pEGFP-1, complete s... 2061 9.6e-290 2
gb|AF028239|AF028239 Mammalian expression vector pCMV-S... 2061 9.9e-290 2
gb|AF025668|AF025668 Epitope tagging vector pCMV-Tag 1,... 2061 1.0e-289 2
gb|U37573|XXU37573 Shuttle expression vector pBKCMV. 2061 1.0e-289 2
gb|U19277|XXU19277 Cloning vector pGFP-N3 green fluor... 2061 1.1e-289 2
gb|U19278|XXU19278 Cloning vector pGFP-C3 green fluor... 2061 1.1e-289 2
gb|U57607|CVU57607 Cloning vector pEGFP-C3 with enhan... 2061 1.1e-289 2
gb|U36202|CVU36202 Cloning vector pS65T-C1, with gree... 2061 1.1e-289 2
gb|U36201|CVU36201 Cloning vector pRSGFP-C1, with gre... 2061 1.1e-289 2
gb|U19279|XXU19279 Cloning vector pGFP-N1 green fluor... 2061 1.1e-289 2
gb|U19280|XXU19280 Cloning vector pGFP-C1 green fluor... 2061 1.1e-289 2
gb|U57609|CVU57609 Cloning vector pEGFP-N3 with enhan... 2061 1.1e-289 2
gb|U55763|CVU55763 Cloning vector pEGFP-C1, complete ... 2061 1.1e-289 2
gb|U19282|XXU19282 Cloning vector pGFP-N2 green fluor... 2061 1.1e-289 2
gb|U19281|XXU19281 Cloning vector pGFP-C2 green fluor... 2061 1.1e-289 2
gb|U55762|CVU55762 Cloning vector pEGFP-N1, complete ... 2061 1.1e-289 2
gb|U57606|CVU57606 Cloning vector pEGFP-C2 with enhan... 2061 1.1e-289 2
gb|U57608|CVU57608 Cloning vector pEGFP-N2 with enhan... 2061 1.1e-289 2
gb|AF050498| Fusion trans-activator vector pFA-... 2061 1.1e-289 2
gb|AF050500| Cloning vector pFA-cFos, complete ... 2061 1.1e-289 2
gb|AF050499| Cloning vector pFA2-elk1, complete... 2061 1.1e-289 2
gb|AF049616|AF049616 Cloning vector pFA2-CREB, complete... 2061 1.3e-289 2
gb|AF041247|AF041247 Expression vector pDual, complete ... 2061 1.3e-289 2
gb|AF060226|AF060226 Eukaryotic expression vector pCR3.... 2061 1.3e-289 2
gb|U90717|TRU90717 Transfection reporter vector pAV4p... 2105 5.8e-286 3
emb|X96612|EVPCMVPA1 Expression vector pCMVPA1 for prot... 2105 6.3e-286 3
emb|X96611|EVPCMVPA3 Expression vector pCMVPA3 for prot... 2105 6.3e-286 3
emb|X96610|EVPCMVPA2 Expression vector pCMVPA2 for prot... 2105 6.3e-286 3
emb|X65279|PWE15 pWE15 cosmid vector DNA 2095 8.2e-282 3
emb|Z12112|PWE15A pWE15A cosmid vector DNA 2095 8.4e-282 3
gb|U47120|CVU47120 Cloning vector pCI-neo, mammalian ... 1925 4.6e-281 2
gb|L07040|NE1EXPVECA pFNeo eukaryotic expression vector... 2095 7.4e-281 3
gb|AF043739|AF043739 Synthetic construct human telomera... 1925 7.5e-281 2
emb|AJ000156|ASAJ156 Artificial DNA. Bicistronic eukary... 1905 1.9e-279 2
gb|L07041|NE1EXPVECB pMHNeo eukaryotic expression vecto... 2095 7.1e-278 3
emb|X57540|CASBREML CAS-BR-E murine leukemia virus, vi... 1752 8.2e-263 3
gb|U94692|RMU94692 Rauscher murine leukemia virus, co... 1849 2.8e-260 4
emb|Y13893|MULV13893 Murine leukemia virus RNA for gag-... 1831 1.5e-256 4
emb|Z11128|REFMLVCGD Friend murine leukemia virus FB29 ... 1813 1.5e-256 4
gb|M93134|MLFCG Friend murine leukemia virus, comp... 1831 8.4e-256 4
dbj|D88386|D88386 Friend murine leukemia virus compl... 1831 4.8e-255 4
gb|M64448|MLEENVAB N-tropic ecotropic endogenous retr... 1481 2.6e-253 5
emb|X02794|REFMLVCG Friend murine leukemia virus (F-Mu... 1592 3.2e-241 4
gb|AF033811|AF033811 Moloney murine leukemia virus, com... 2447 1.3e-240 2
gb|K00021|MLFRO Friend spleen focus-forming virus ... 1445 3.2e-235 6
gb|J02264|MLMLTR Moloney murine sarcoma virus unint... 2926 2.7e-232 1
gb|K02712|MSVMUSV FBR murine osteosarcoma virus (pro... 894 8.5e-220 7
gb|M64447|MLEENVAA N-tropic ecotropic endogenous retr... 780 2.6e-218 7
emb|X03347|REMSVFBR FBR-murine osteosarcoma provirus g... 987 4.1e-217 6
gb|K02729|MLV4070A Mouse leukemia virus (amphotropic)... 1315 2.1e-208 7
gb|M64095|MLVBM5ECOL Murine leukemia virus gag protein,... 981 2.3e-205 7
emb|X14576|REMULVDU Murine leukemia virus defective Du... 1008 2.9e-205 6
gb|M54792|MLVTSBA1 Murine leukemia virus long termina... 2180 9.2e-199 3
gb|S77834|S77834 IL-2=interleukin-2 [human, lymphoc... 2367 8.6e-186 1
emb|V00564|HSIL02 Human mRNA encoding interleukin-2 ... 2367 8.6e-186 1
emb|X01586|HSIL2R Human mRNA for interleukin 2 2358 4.8e-185 1
gb|K03174|GIBIL2 Ape (gibbon) interleukin 2 mRNA. 2358 4.8e-185 1
gb|S82692|S82692 interleukin-2 [human, placenta, te... 2358 4.8e-185 1
gb|J02263|MLM124 Moloney murine sarcoma virus clone 124 (proviral),
complete genome.
Length = 5833
Plus Strand HSPs:
Score = 7183 (1984.8 bits), Expect = 0.0, P = 0.0
Identities = 1447/1460 (99%), Positives = 1447/1460 (99%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 63
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 64 AAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 123
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 183
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 243
Query: 243 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 303
Query: 303 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 363
Query: 363 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 423
Query: 423 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 483
Query: 483 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 543
Query: 543 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCC 603
Query: 603 GGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 GGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAG 663
Query: 663 CAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTC 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 CAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTC 723
Query: 723 TGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 TGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCT 783
Query: 783 GAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 GAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCC 843
Query: 843 CGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGTAG 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 CGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGTAG 903
Query: 903 GAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAACC 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 GAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAACC 963
Query: 963 GAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 GAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTT 1023
Query: 1023 CTGTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGT 1082
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1024 CTGTATTTGTCTGAAAATATGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGAT 1083
Query: 1083 CACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGT 1142
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 CACTGGAAAGATGTCGAGCGGCTCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGT 1143
Query: 1143 TGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGC 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 TGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGC 1203
Query: 1203 ACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCAT 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 ACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCAT 1263
Query: 1263 GGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 GGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCT 1323
Query: 1323 CCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCG 1382
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 1324 CCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCTTCCATCCGCGCCG 1383
Query: 1383 TCTCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTC 1442
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1384 TCTCTCCCCCTTGAACCTCCTCTTTCGACCCCGCCTCAATCCTCCCTTTATCCAGCCCTC 1443
Query: 1443 ACTCCTTCTCTAGGCGGGAA 1462
||||||||| | |||| ||
Sbjct: 1444 ACTCCTTCTTTGGGCGCCAA 1463
Score = 2926 (808.5 bits), Expect = 2.7e-232, P = 2.7e-232
Identities = 586/587 (99%), Positives = 586/587 (99%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 5306
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5307 AAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 5366
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 5426
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 5486
Query: 243 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5487 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 5546
Query: 303 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5547 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 5606
Query: 363 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5607 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 5666
Query: 423 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5667 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 5726
Query: 483 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5727 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 5786
Query: 543 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATT 589
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5787 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATT 5833
emb|V01185|REMSVX Genome of murine sarcoma virus (strain 124). Contains
genes for the gag polyprotein, which is post- translationally
cleaved into the core proteins p15, p12, p30 and p10, for an
unknown protein (gene X), and the transforming g...
Length = 5833
Plus Strand HSPs:
Score = 7165 (1979.8 bits), Expect = 0.0, P = 0.0
Identities = 1445/1460 (98%), Positives = 1445/1460 (98%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 63
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 64 AAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 123
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 183
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 243
Query: 243 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 303
Query: 303 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 363
Query: 363 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 423
Query: 423 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 483
Query: 483 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 543
Query: 543 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCC 603
Query: 603 GGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 GGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAG 663
Query: 663 CAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTC 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 CAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTC 723
Query: 723 TGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCT 782
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 TGTACTAGTTAGCTAACATGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCT 783
Query: 783 GAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 GAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCC 843
Query: 843 CGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGTAG 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 CGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGTAG 903
Query: 903 GAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAACC 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 GAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAACC 963
Query: 963 GAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 GAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTT 1023
Query: 1023 CTGTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGT 1082
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1024 CTGTATTTGTCTGAAAATATGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGAT 1083
Query: 1083 CACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGT 1142
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 CACTGGAAAGATGTCGAGCGGCTCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGT 1143
Query: 1143 TGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGC 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 TGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGC 1203
Query: 1203 ACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCAT 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 ACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCAT 1263
Query: 1263 GGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 GGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCT 1323
Query: 1323 CCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCG 1382
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 1324 CCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCTTCCATCCGCGCCG 1383
Query: 1383 TCTCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTC 1442
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1384 TCTCTCCCCCTTGAACCTCCTCTTTCGACCCCGCCTCAATCCTCCCTTTATCCAGCCCTC 1443
Query: 1443 ACTCCTTCTCTAGGCGGGAA 1462
||||||||| | |||| ||
Sbjct: 1444 ACTCCTTCTTTGGGCGCCAA 1463
Score = 2926 (808.5 bits), Expect = 2.7e-232, P = 2.7e-232
Identities = 586/587 (99%), Positives = 586/587 (99%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 5306
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5307 AAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 5366
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 5426
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 5486
Query: 243 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5487 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 5546
Query: 303 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5547 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 5606
Query: 363 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5607 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 5666
Query: 423 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5667 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 5726
Query: 483 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5727 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 5786
Query: 543 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATT 589
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5787 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATT 5833
gb|AF011892|AF011892 Moloney murine sarcoma virus gag-mos fusion
protein gene, complete cds
Length = 3401
Plus Strand HSPs:
Score = 1263 (349.0 bits), Expect = 5.8e-94, P = 5.8e-94
Identities = 255/258 (98%), Positives = 255/258 (98%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 63
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 64 AAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 123
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 183
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 184 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCT 243
Query: 243 CGGGGCCAAGAACAGATG 260
| ||||||||||||||||
Sbjct: 244 CAGGGCCAAGAACAGATG 261
Score = 1263 (349.0 bits), Expect = 5.8e-94, P = 5.8e-94
Identities = 255/258 (98%), Positives = 255/258 (98%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2739 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 2798
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2799 AAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 2858
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2859 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 2918
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2919 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCT 2978
Query: 243 CGGGGCCAAGAACAGATG 260
| ||||||||||||||||
Sbjct: 2979 CAGGGCCAAGAACAGATG 2996
Score = 5474 (1512.6 bits), Expect = 0.0, P = 0.0
Identities = 1098/1102 (99%), Positives = 1098/1102 (99%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 263
Query: 187 ACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGG 323
Query: 247 GCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 GCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCA 383
Query: 307 GATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 GATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCA 443
Query: 367 ATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCC 503
Query: 427 CACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTAT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 CACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTAT 563
Query: 487 TCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 TCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGG 623
Query: 547 TCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCCGGGA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 TCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCCGGGA 683
Query: 607 TTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAGCAAC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 TTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAGCAAC 743
Query: 667 TTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTCTGTA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 TTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTCTGTA 803
Query: 727 CTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCTGAAC 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 CTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCTGAAC 863
Query: 787 ACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCCCGAC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCCCGAC 923
Query: 847 CTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGTAGGAGA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 CTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGTAGGAGA 983
Query: 907 CGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAACCGAAG 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 CGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAACCGAAG 1043
Query: 967 CCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 CCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGT 1103
Query: 1027 ATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACT 1086
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1104 ATTTGTCTGAAAATATGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGATCACT 1163
Query: 1087 GGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGG 1146
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 GGAAAGATGTCGAGCGGCTCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGG 1223
Query: 1147 TTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCT 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 TTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCT 1283
Query: 1207 TTAACCGAGACCTCATCACCCA 1228
||||||||||||||||||||||
Sbjct: 1284 TTAACCGAGACCTCATCACCCA 1305
Score = 2315 (639.7 bits), Expect = 1.8e-181, P = 1.8e-181
Identities = 463/463 (100%), Positives = 463/463 (100%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2939 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 2998
Query: 187 ACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 ACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGG 3058
Query: 247 GCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 GCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCA 3118
Query: 307 GATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 GATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCA 3178
Query: 367 ATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 ATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCC 3238
Query: 427 CACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTAT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3239 CACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTAT 3298
Query: 487 TCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 TCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGG 3358
Query: 547 TCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATT 589
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 TCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATT 3401
dbj|D88622|D88622 Bicistronic retroviral vector
Length = 6072
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 234
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 235 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 294
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 354
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 414
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 474
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 534
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 594
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 654
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 714
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 774
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 834
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 894
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 954
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 1014
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1074
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1134
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1135 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1163
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1223
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1283
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1343
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1403
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1463
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1523
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1583
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1640
Score = 1925 (531.9 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%), Strand = Plus / Plus
Query: 2556 CATGATTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATT 2615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 CATGATTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATT 2322
Query: 2616 CGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTC 2675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 CGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTC 2382
Query: 2676 AGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACT 2735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 AGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACT 2442
Query: 2736 GCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGT 2795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 GCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGT 2502
Query: 2796 GCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCA 2855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 GCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCA 2562
Query: 2856 GGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAAT 2915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 GGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAAT 2622
Query: 2916 GCGGCGGCTGCATACGCTTGATCCG 2940
|||||||||||||||||||||||||
Sbjct: 2623 GCGGCGGCTGCATACGCTTGATCCG 2647
Score = 96 (26.5 bits), Expect = 8.6e-124, Sum P(5) = 8.6e-124
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3120 TGAAAGACCCCACCTGTAGGT 3140
Score = 414 (114.4 bits), Expect = 8.6e-124, Sum P(5) = 8.6e-124
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3142 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 3201
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 3202 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 3231
Score = 319 (88.1 bits), Expect = 8.6e-124, Sum P(5) = 8.6e-124
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3251 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 3310
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 3311 ACAGCTGAATATGGGCCAAA 3330
Score = 765 (211.4 bits), Expect = 8.6e-124, Sum P(5) = 8.6e-124
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 3434 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 3493
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 3494 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 3553
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 3554 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 3613
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 3614 ATAAACCCTCTTGCAGTT 3631
Score = 407 (112.5 bits), Expect = 8.6e-124, Sum P(5) = 8.6e-124
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3697 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 3756
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 3757 ACCCACCACCGGGAGGTAAGCTGGC 3781
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3326 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 3383
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3246 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3305
Query: 258 ATGG 261
||||
Sbjct: 3306 ATGG 3309
Score = 673 (186.0 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3321 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3380
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3381 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 3440
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 3441 GGTGCCCCAAGGACCTGAAA 3460
Score = 309 (85.4 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3630 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 3689
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 3690 CCGTCAGCGGGGGTCTTTCATTTGGGG 3716
gb|U00220|U00220 Human immunodeficiency virus type 1 Nef protein and
neomycin phosphotransferase genes, complete cds.
Length = 6506
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 234
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 235 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 294
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 354
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 414
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 474
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 534
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 594
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 654
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 714
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 774
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 834
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 894
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 954
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 1014
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1074
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1134
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1135 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1163
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1223
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1283
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1343
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1403
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1463
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1523
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1583
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1640
Score = 3868 (1068.8 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 776/785 (98%), Positives = 776/785 (98%), Strand = Plus / Plus
Query: 2156 CCGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 2215
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 CGGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 2356
Query: 2216 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 2416
Query: 2276 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 2335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 2476
Query: 2336 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 2536
Query: 2396 TGACTAANNNNNNNNATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 2455
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 TGACTAATTTTTTTTATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 2596
Query: 2456 AAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCTTGGGCTGCAGGTC 2515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2597 AAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCTTGGGCTGCAGGTC 2656
Query: 2516 GAGGCGGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGAT 2575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 GAGGCGGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGAT 2716
Query: 2576 TGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAAC 2635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2717 TGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAAC 2776
Query: 2636 AGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTC 2695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 AGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTC 2836
Query: 2696 TTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGC 2755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 TTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGC 2896
Query: 2756 TATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAG 2815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 TATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAG 2956
Query: 2816 CGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACC 2875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2957 CGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACC 3016
Query: 2876 TTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTG 2935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3017 TTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTG 3076
Query: 2936 ATCCG 2940
|||||
Sbjct: 3077 ATCCG 3081
Score = 96 (26.5 bits), Expect = 1.1e-123, Sum P(5) = 1.1e-123
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3554 TGAAAGACCCCACCTGTAGGT 3574
Score = 414 (114.4 bits), Expect = 1.1e-123, Sum P(5) = 1.1e-123
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3576 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 3635
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 3636 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 3665
Score = 319 (88.1 bits), Expect = 1.1e-123, Sum P(5) = 1.1e-123
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3685 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 3744
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 3745 ACAGCTGAATATGGGCCAAA 3764
Score = 765 (211.4 bits), Expect = 1.1e-123, Sum P(5) = 1.1e-123
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 3868 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 3927
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 3928 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 3987
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 3988 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 4047
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 4048 ATAAACCCTCTTGCAGTT 4065
Score = 407 (112.5 bits), Expect = 1.1e-123, Sum P(5) = 1.1e-123
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4131 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 4190
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 4191 ACCCACCACCGGGAGGTAAGCTGGC 4215
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3760 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 3817
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3680 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3739
Query: 258 ATGG 261
||||
Sbjct: 3740 ATGG 3743
Score = 673 (186.0 bits), Expect = 3.5e-62, Sum P(2) = 3.5e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3755 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3814
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3815 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 3874
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 3875 GGTGCCCCAAGGACCTGAAA 3894
Score = 309 (85.4 bits), Expect = 3.5e-62, Sum P(2) = 3.5e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4064 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 4123
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 4124 CCGTCAGCGGGGGTCTTTCATTTGGGG 4150
gb|M77239|SYNRRV Cloning vector pLXSH from Moloney murine leukemia
virus, complete vector sequence.
Length = 6259
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 234
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 235 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 294
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 354
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 414
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 474
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 534
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 594
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 654
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 714
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 774
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 834
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 894
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 954
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 1014
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1074
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1134
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1135 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1163
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1223
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1283
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1343
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1403
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1463
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1523
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1583
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1640
Score = 1678 (463.7 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 338/347 (97%), Positives = 338/347 (97%), Strand = Plus / Plus
Query: 2156 CCGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 2215
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1665 CGGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 1724
Query: 2216 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1725 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 1784
Query: 2276 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 2335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1785 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 1844
Query: 2336 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1845 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 1904
Query: 2396 TGACTAANNNNNNNNATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 2455
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1905 TGACTAATTTTTTTTATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 1964
Query: 2456 AAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCT 2502
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1965 AAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCT 2011
Score = 96 (26.5 bits), Expect = 9.7e-124, Sum P(5) = 9.7e-124
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3307 TGAAAGACCCCACCTGTAGGT 3327
Score = 414 (114.4 bits), Expect = 9.7e-124, Sum P(5) = 9.7e-124
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3329 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 3388
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 3389 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 3418
Score = 319 (88.1 bits), Expect = 9.7e-124, Sum P(5) = 9.7e-124
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3438 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 3497
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 3498 ACAGCTGAATATGGGCCAAA 3517
Score = 765 (211.4 bits), Expect = 9.7e-124, Sum P(5) = 9.7e-124
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 3621 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 3680
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 3681 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 3740
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 3741 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 3800
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 3801 ATAAACCCTCTTGCAGTT 3818
Score = 407 (112.5 bits), Expect = 9.7e-124, Sum P(5) = 9.7e-124
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3884 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 3943
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 3944 ACCCACCACCGGGAGGTAAGCTGGC 3968
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3513 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 3570
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3433 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3492
Query: 258 ATGG 261
||||
Sbjct: 3493 ATGG 3496
Score = 673 (186.0 bits), Expect = 3.4e-62, Sum P(2) = 3.4e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3508 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3567
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3568 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 3627
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 3628 GGTGCCCCAAGGACCTGAAA 3647
Score = 309 (85.4 bits), Expect = 3.4e-62, Sum P(2) = 3.4e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3817 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 3876
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 3877 CCGTCAGCGGGGGTCTTTCATTTGGGG 3903
gb|M63653|SYNMMLPLN6 Moloney murine leukemia virus retroviral vector
pLNL6, complete genome. gb|I77211|I77211 Sequence 1 from patent US
5693508
Length = 6145
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 204
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 264
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 324
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 384
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 444
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 504
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 564
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 624
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 684
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 744
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 804
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 864
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 924
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 984
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1044
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1104
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1105 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1133
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1193
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1253
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1313
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1373
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1433
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1493
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1553
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1610
Score = 2096 (579.2 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 420/421 (99%), Positives = 420/421 (99%), Strand = Plus / Plus
Query: 2520 CGGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGATTGCA 2579
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 CCGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGATTGCA 1678
Query: 2580 CGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGAC 2639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 CGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGAC 1738
Query: 2640 AATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTT 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 AATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTT 1798
Query: 2700 TGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATC 2759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799 TGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATC 1858
Query: 2760 GTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGG 2819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1859 GTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGG 1918
Query: 2820 AAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGC 2879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1919 AAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGC 1978
Query: 2880 TCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCC 2939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1979 TCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCC 2038
Query: 2940 G 2940
|
Sbjct: 2039 G 2039
Score = 96 (26.5 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3193 TGAAAGACCCCACCTGTAGGT 3213
Score = 414 (114.4 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3215 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 3274
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 3275 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 3304
Score = 319 (88.1 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3324 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 3383
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 3384 ACAGCTGAATATGGGCCAAA 3403
Score = 765 (211.4 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 3507 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 3566
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 3567 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 3626
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 3627 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 3686
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 3687 ATAAACCCTCTTGCAGTT 3704
Score = 407 (112.5 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3770 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 3829
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 3830 ACCCACCACCGGGAGGTAAGCTGGC 3854
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3399 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 3456
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3319 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3378
Query: 258 ATGG 261
||||
Sbjct: 3379 ATGG 3382
Score = 673 (186.0 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3394 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3453
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3454 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 3513
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 3514 GGTGCCCCAAGGACCTGAAA 3533
Score = 309 (85.4 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3703 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 3762
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 3763 CCGTCAGCGGGGGTCTTTCATTTGGGG 3789
gb|M28246|SYNMMLPLN2 Moloney murine leukemia virus retroviral vector
pLNSX, complete genome.
Length = 6149
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 204
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 264
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 324
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 384
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 444
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 504
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 564
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 624
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 684
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 744
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 804
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 864
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 924
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 984
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1044
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1104
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1105 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1133
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1193
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1253
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1313
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1373
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1433
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1493
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1553
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1610
Score = 2096 (579.2 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 420/421 (99%), Positives = 420/421 (99%), Strand = Plus / Plus
Query: 2520 CGGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGATTGCA 2579
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 CCGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGATTGCA 1678
Query: 2580 CGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGAC 2639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 CGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGAC 1738
Query: 2640 AATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTT 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 AATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTT 1798
Query: 2700 TGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATC 2759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799 TGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATC 1858
Query: 2760 GTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGG 2819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1859 GTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGG 1918
Query: 2820 AAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGC 2879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1919 AAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGC 1978
Query: 2880 TCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCC 2939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1979 TCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCC 2038
Query: 2940 G 2940
|
Sbjct: 2039 G 2039
Score = 96 (26.5 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3197 TGAAAGACCCCACCTGTAGGT 3217
Score = 414 (114.4 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3219 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 3278
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 3279 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 3308
Score = 319 (88.1 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3328 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 3387
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 3388 ACAGCTGAATATGGGCCAAA 3407
Score = 765 (211.4 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 3511 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 3570
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 3571 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 3630
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 3631 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 3690
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 3691 ATAAACCCTCTTGCAGTT 3708
Score = 407 (112.5 bits), Expect = 9.1e-124, Sum P(5) = 9.1e-124
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3774 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 3833
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 3834 ACCCACCACCGGGAGGTAAGCTGGC 3858
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3403 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 3460
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3323 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3382
Query: 258 ATGG 261
||||
Sbjct: 3383 ATGG 3386
Score = 673 (186.0 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3398 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3457
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3458 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 3517
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 3518 GGTGCCCCAAGGACCTGAAA 3537
Score = 309 (85.4 bits), Expect = 3.3e-62, Sum P(2) = 3.3e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3707 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 3766
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 3767 CCGTCAGCGGGGGTCTTTCATTTGGGG 3793
Score = 1683 (465.0 bits), Expect = 6.8e-129, P = 6.8e-129
Identities = 339/348 (97%), Positives = 339/348 (97%), Strand = Plus / Plus
Query: 2156 CCGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 2215
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 CGGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 2861
Query: 2216 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 2921
Query: 2276 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 2335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2922 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 2981
Query: 2336 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2982 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 3041
Query: 2396 TGACTAANNNNNNNNATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 2455
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3042 TGACTAATTTTTTTTATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 3101
Query: 2456 AAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCTT 2503
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3102 AAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCTT 3149
gb|M28248|SYNMMLPLN4 Moloney murine leukemia virus retroviral vector
pLXSN, complete genome.
Length = 5874
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 234
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 235 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 294
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 354
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 414
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 474
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 534
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 594
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 654
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 714
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 774
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 834
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 894
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 954
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 1014
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1074
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1134
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1135 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1163
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1223
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1283
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1343
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1403
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1463
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1523
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1583
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1640
Score = 3868 (1068.8 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 776/785 (98%), Positives = 776/785 (98%), Strand = Plus / Plus
Query: 2156 CCGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 2215
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1665 CGGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 1724
Query: 2216 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1725 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 1784
Query: 2276 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 2335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1785 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 1844
Query: 2336 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1845 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 1904
Query: 2396 TGACTAANNNNNNNNATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 2455
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1905 TGACTAATTTTTTTTATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 1964
Query: 2456 AAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCTTGGGCTGCAGGTC 2515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1965 AAGTAGTGAGGAGGCTTTTTTGGAGGCCTAGGCTTTTGCAAAAAGCTTGGGCTGCAGGTC 2024
Query: 2516 GAGGCGGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGAT 2575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2025 GAGGCGGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGAT 2084
Query: 2576 TGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAAC 2635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2085 TGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAAC 2144
Query: 2636 AGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTC 2695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2145 AGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTC 2204
Query: 2696 TTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGC 2755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2205 TTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGC 2264
Query: 2756 TATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAG 2815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2265 TATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAG 2324
Query: 2816 CGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACC 2875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2325 CGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACC 2384
Query: 2876 TTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTG 2935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2385 TTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTG 2444
Query: 2936 ATCCG 2940
|||||
Sbjct: 2445 ATCCG 2449
Score = 96 (26.5 bits), Expect = 7.6e-124, Sum P(5) = 7.6e-124
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 2922 TGAAAGACCCCACCTGTAGGT 2942
Score = 414 (114.4 bits), Expect = 7.6e-124, Sum P(5) = 7.6e-124
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2944 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 3003
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 3004 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 3033
Score = 319 (88.1 bits), Expect = 7.6e-124, Sum P(5) = 7.6e-124
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3053 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 3112
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 3113 ACAGCTGAATATGGGCCAAA 3132
Score = 765 (211.4 bits), Expect = 7.6e-124, Sum P(5) = 7.6e-124
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 3236 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 3295
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 3296 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 3355
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 3356 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 3415
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 3416 ATAAACCCTCTTGCAGTT 3433
Score = 407 (112.5 bits), Expect = 7.6e-124, Sum P(5) = 7.6e-124
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3499 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 3558
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 3559 ACCCACCACCGGGAGGTAAGCTGGC 3583
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3128 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 3185
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3048 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3107
Query: 258 ATGG 261
||||
Sbjct: 3108 ATGG 3111
Score = 673 (186.0 bits), Expect = 3.2e-62, Sum P(2) = 3.2e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3123 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3182
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3183 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 3242
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 3243 GGTGCCCCAAGGACCTGAAA 3262
Score = 309 (85.4 bits), Expect = 3.2e-62, Sum P(2) = 3.2e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3432 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 3491
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 3492 CCGTCAGCGGGGGTCTTTCATTTGGGG 3518
gb|M64754|SYNMOV2 Moloney murine leukemia virus retroviral vector
pLHDCX, complete sequence.
Length = 6837
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(2) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 234
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 235 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 294
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 354
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 414
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 474
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 534
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 594
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 654
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 714
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 774
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 834
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 894
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 954
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 1014
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1074
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1134
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1135 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1163
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(2) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1223
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1283
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1343
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1403
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1463
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1523
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1583
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1640
Score = 96 (26.5 bits), Expect = 1.4e-123, Sum P(5) = 1.4e-123
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3885 TGAAAGACCCCACCTGTAGGT 3905
Score = 414 (114.4 bits), Expect = 1.4e-123, Sum P(5) = 1.4e-123
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3907 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 3966
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 3967 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 3996
Score = 319 (88.1 bits), Expect = 1.4e-123, Sum P(5) = 1.4e-123
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4016 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 4075
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 4076 ACAGCTGAATATGGGCCAAA 4095
Score = 765 (211.4 bits), Expect = 1.4e-123, Sum P(5) = 1.4e-123
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 4199 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 4258
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 4259 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 4318
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 4319 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 4378
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 4379 ATAAACCCTCTTGCAGTT 4396
Score = 407 (112.5 bits), Expect = 1.4e-123, Sum P(5) = 1.4e-123
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4462 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 4521
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 4522 ACCCACCACCGGGAGGTAAGCTGGC 4546
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4091 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 4148
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4011 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 4070
Query: 258 ATGG 261
||||
Sbjct: 4071 ATGG 4074
Score = 673 (186.0 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4086 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 4145
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 4146 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 4205
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 4206 GGTGCCCCAAGGACCTGAAA 4225
Score = 309 (85.4 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4395 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 4454
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 4455 CCGTCAGCGGGGGTCTTTCATTTGGGG 4481
gb|M28245|SYNMMLPLN1 Moloney murine leukemia virus retroviral vector
pLN, complete genome.
Length = 5464
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 204
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 264
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 324
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 384
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 444
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 504
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 564
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 624
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 684
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 744
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 804
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 864
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 924
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 984
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1044
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1104
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1105 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1133
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1193
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1253
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1313
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1373
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1433
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1493
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1553
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1610
Score = 2096 (579.2 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 420/421 (99%), Positives = 420/421 (99%), Strand = Plus / Plus
Query: 2520 CGGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGATTGCA 2579
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 CCGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGATTGCA 1678
Query: 2580 CGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGAC 2639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 CGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGAC 1738
Query: 2640 AATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTT 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 AATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTT 1798
Query: 2700 TGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATC 2759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799 TGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATC 1858
Query: 2760 GTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGG 2819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1859 GTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGG 1918
Query: 2820 AAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGC 2879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1919 AAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGC 1978
Query: 2880 TCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCC 2939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1979 TCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCC 2038
Query: 2940 G 2940
|
Sbjct: 2039 G 2039
Score = 96 (26.5 bits), Expect = 5.7e-124, Sum P(5) = 5.7e-124
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 2512 TGAAAGACCCCACCTGTAGGT 2532
Score = 414 (114.4 bits), Expect = 5.7e-124, Sum P(5) = 5.7e-124
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2534 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 2593
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 2594 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 2623
Score = 319 (88.1 bits), Expect = 5.7e-124, Sum P(5) = 5.7e-124
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2643 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 2702
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 2703 ACAGCTGAATATGGGCCAAA 2722
Score = 765 (211.4 bits), Expect = 5.7e-124, Sum P(5) = 5.7e-124
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 2826 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 2885
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 2886 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 2945
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 2946 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 3005
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 3006 ATAAACCCTCTTGCAGTT 3023
Score = 407 (112.5 bits), Expect = 5.7e-124, Sum P(5) = 5.7e-124
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3089 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 3148
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 3149 ACCCACCACCGGGAGGTAAGCTGGC 3173
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2718 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 2775
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2638 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 2697
Query: 258 ATGG 261
||||
Sbjct: 2698 ATGG 2701
Score = 673 (186.0 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2713 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 2772
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 2773 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 2832
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 2833 GGTGCCCCAAGGACCTGAAA 2852
Score = 309 (85.4 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 3081
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 3082 CCGTCAGCGGGGGTCTTTCATTTGGGG 3108
gb|M28247|SYNMMLPLN3 Moloney murine leukemia virus retroviral vector
pLNCX, complete genome.
Length = 6620
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 204
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 264
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 324
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 384
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 444
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 504
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 564
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 624
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 684
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 744
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 804
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 864
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 924
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 984
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1044
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1104
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1105 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1133
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1193
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1253
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1313
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1373
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1433
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1493
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1553
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1610
Score = 2096 (579.2 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 420/421 (99%), Positives = 420/421 (99%), Strand = Plus / Plus
Query: 2520 CGGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGATTGCA 2579
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 CCGATCTGATCAAGAGACAGGATGAGGATCGTTTCGCATGATTGAACAAGATGGATTGCA 1678
Query: 2580 CGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGAC 2639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 CGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGAC 1738
Query: 2640 AATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTT 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 AATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTT 1798
Query: 2700 TGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATC 2759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799 TGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATC 1858
Query: 2760 GTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGG 2819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1859 GTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGG 1918
Query: 2820 AAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGC 2879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1919 AAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGC 1978
Query: 2880 TCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCC 2939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1979 TCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCC 2038
Query: 2940 G 2940
|
Sbjct: 2039 G 2039
Score = 96 (26.5 bits), Expect = 1.2e-123, Sum P(5) = 1.2e-123
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3668 TGAAAGACCCCACCTGTAGGT 3688
Score = 414 (114.4 bits), Expect = 1.2e-123, Sum P(5) = 1.2e-123
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3690 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 3749
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 3750 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 3779
Score = 319 (88.1 bits), Expect = 1.2e-123, Sum P(5) = 1.2e-123
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3799 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 3858
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 3859 ACAGCTGAATATGGGCCAAA 3878
Score = 765 (211.4 bits), Expect = 1.2e-123, Sum P(5) = 1.2e-123
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 3982 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 4041
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 4042 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 4101
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 4102 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 4161
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 4162 ATAAACCCTCTTGCAGTT 4179
Score = 407 (112.5 bits), Expect = 1.2e-123, Sum P(5) = 1.2e-123
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4245 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 4304
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 4305 ACCCACCACCGGGAGGTAAGCTGGC 4329
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3874 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 3931
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3794 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3853
Query: 258 ATGG 261
||||
Sbjct: 3854 ATGG 3857
Score = 673 (186.0 bits), Expect = 3.6e-62, Sum P(2) = 3.6e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3869 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3928
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3929 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 3988
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 3989 GGTGCCCCAAGGACCTGAAA 4008
Score = 309 (85.4 bits), Expect = 3.6e-62, Sum P(2) = 3.6e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4178 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 4237
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 4238 CCGTCAGCGGGGGTCTTTCATTTGGGG 4264
gb|M64753|SYNMOV1 Moloney murine leukemia virus retroviral vector
pLXSHD, complete sequence.
Length = 6374
Plus Strand HSPs:
Score = 4936 (1363.9 bits), Expect = 0.0, Sum P(4) = 0.0
Identities = 988/989 (99%), Positives = 988/989 (99%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 234
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 235 GGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGC 294
Query: 121 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 TGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACA 354
Query: 181 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 GATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGG 414
Query: 241 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 CTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAA 474
Query: 301 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 TCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAAC 534
Query: 361 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 TAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAA 594
Query: 421 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 AGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTAC 654
Query: 481 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 CCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTG 714
Query: 541 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 GGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGT 774
Query: 601 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 CCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCC 834
Query: 661 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 AGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCG 894
Query: 721 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 TCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTT 954
Query: 781 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 CTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGG 1014
Query: 841 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 CCCGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGT 1074
Query: 901 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 AGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAA 1134
Query: 961 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 989
|||||||||||||||||||||||||||||
Sbjct: 1135 CCGAAGCCGCGCGTCTTGTCTGCTGCAGC 1163
Score = 2385 (659.0 bits), Expect = 0.0, Sum P(4) = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%), Strand = Plus / Plus
Query: 982 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 GCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATT 1223
Query: 1042 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 AGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGC 1283
Query: 1102 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 GGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTG 1343
Query: 1162 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 CAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCA 1403
Query: 1222 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 TCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCC 1463
Query: 1282 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 CCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTG 1523
Query: 1342 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 TACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTC 1583
Query: 1402 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 CTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCG 1640
Score = 1578 (436.0 bits), Expect = 0.0, Sum P(4) = 0.0
Identities = 318/327 (97%), Positives = 318/327 (97%), Strand = Plus / Plus
Query: 2156 CCGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 2215
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1665 CGGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGA 1724
Query: 2216 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1725 AGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCC 1784
Query: 2276 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 2335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1785 CCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAACCATAGTCCCGCCC 1844
Query: 2336 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 2395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1845 CTAACTCCGCCCATCCCGCCCCTAACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGC 1904
Query: 2396 TGACTAANNNNNNNNATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 2455
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1905 TGACTAATTTTTTTTATTTATGCAGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAG 1964
Query: 2456 AAGTAGTGAGGAGGCTTTTTTGGAGGC 2482
|||||||||||||||||||||||||||
Sbjct: 1965 AAGTAGTGAGGAGGCTTTTTTGGAGGC 1991
Score = 115 (31.8 bits), Expect = 0.0, Sum P(4) = 0.0
Identities = 23/23 (100%), Positives = 23/23 (100%), Strand = Plus / Plus
Query: 2481 GCCTAGGCTTTTGCAAAAAGCTT 2503
|||||||||||||||||||||||
Sbjct: 3352 GCCTAGGCTTTTGCAAAAAGCTT 3374
Score = 96 (26.5 bits), Expect = 1.0e-123, Sum P(5) = 1.0e-123
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3422 TGAAAGACCCCACCTGTAGGT 3442
Score = 414 (114.4 bits), Expect = 1.0e-123, Sum P(5) = 1.0e-123
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3444 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 3503
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 3504 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 3533
Score = 319 (88.1 bits), Expect = 1.0e-123, Sum P(5) = 1.0e-123
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3553 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 3612
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 3613 ACAGCTGAATATGGGCCAAA 3632
Score = 765 (211.4 bits), Expect = 1.0e-123, Sum P(5) = 1.0e-123
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 3736 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 3795
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 3796 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 3855
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 3856 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 3915
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 3916 ATAAACCCTCTTGCAGTT 3933
Score = 407 (112.5 bits), Expect = 1.0e-123, Sum P(5) = 1.0e-123
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3999 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 4058
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 4059 ACCCACCACCGGGAGGTAAGCTGGC 4083
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3628 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 3685
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3548 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3607
Query: 258 ATGG 261
||||
Sbjct: 3608 ATGG 3611
Score = 673 (186.0 bits), Expect = 3.4e-62, Sum P(2) = 3.4e-62
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3623 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 3682
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 3683 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 3742
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 3743 GGTGCCCCAAGGACCTGAAA 3762
Score = 309 (85.4 bits), Expect = 3.4e-62, Sum P(2) = 3.4e-62
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3932 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 3991
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 3992 CCGTCAGCGGGGGTCTTTCATTTGGGG 4018
gb|AF033813|AF033813 Moloney murine sarcoma virus, complete genome
Length = 5833
Plus Strand HSPs:
Score = 2926 (808.5 bits), Expect = 2.7e-232, P = 2.7e-232
Identities = 586/587 (99%), Positives = 586/587 (99%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4762 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 4821
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4822 AAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 4881
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4882 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 4941
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4942 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 5001
Query: 243 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5002 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 5061
Query: 303 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5062 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 5121
Query: 363 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5122 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 5181
Query: 423 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5182 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 5241
Query: 483 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5242 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 5301
Query: 543 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATT 589
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5302 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATT 5348
Score = 2401 (663.4 bits), Expect = 1.3e-188, P = 1.3e-188
Identities = 481/482 (99%), Positives = 481/482 (99%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 5411
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5412 AAAAATACATAACTGAGAATAGAAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 5471
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5472 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 5531
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5532 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 5591
Query: 243 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5592 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 5651
Query: 303 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5652 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 5711
Query: 363 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5712 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 5771
Query: 423 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5772 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 5831
Query: 483 GT 484
||
Sbjct: 5832 GT 5833
Score = 4782 (1321.4 bits), Expect = 0.0, P = 0.0
Identities = 966/978 (98%), Positives = 966/978 (98%), Strand = Plus / Plus
Query: 485 ATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAG 60
Query: 545 GGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCCGG 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 GGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCCGG 120
Query: 605 GATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAGCA 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 GATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAGCA 180
Query: 665 ACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTCTG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTCTG 240
Query: 725 TACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCTGA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 TACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCTGA 300
Query: 785 ACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCCCG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCCCG 360
Query: 845 ACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGTAGGA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGGATATGTGGTTCTGGTAGGA 420
Query: 905 GACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAACCGA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 GACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTTTGCTTTCGGTTTGGAACCGA 480
Query: 965 AGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 AGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTGTGTTTCT 540
Query: 1025 GTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGGTCA 1084
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 541 GTATTTGTCTGAAAATATGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCTTAGATCA 600
Query: 1085 CTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTG 1144
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 CTGGAAAGATGTCGAGCGGCTCGCTCACAACCAGTCGGTAGATGTCAAGAAGAGACGTTG 660
Query: 1145 GGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCAC 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 GGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAGACGGCAC 720
Query: 1205 CTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 CTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCCCGCATGG 780
Query: 1265 ACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCC 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACCCCCCTCC 840
Query: 1325 CTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCGCCCCGTC 1384
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 841 CTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCTTCCATCCGCGCCGTC 900
Query: 1385 TCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAGCCCTCAC 1444
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 901 TCTCCCCCTTGAACCTCCTCTTTCGACCCCGCCTCAATCCTCCCTTTATCCAGCCCTCAC 960
Query: 1445 TCCTTCTCTAGGCGGGAA 1462
||||||| | |||| ||
Sbjct: 961 TCCTTCTTTGGGCGCCAA 978
gb|J02266|MLMPROCG Moloney murine sarcoma virus (proviral), complete genome.
Length = 5828
Plus Strand HSPs:
Score = 4397 (1215.0 bits), Expect = 0.0, Sum P(2) = 0.0
Identities = 881/883 (99%), Positives = 881/883 (99%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 60
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 120
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 180
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 240
Query: 243 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 300
Query: 303 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 360
Query: 363 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 420
Query: 423 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 480
Query: 483 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 540
Query: 543 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGGGGGCTCGTCC 600
Query: 603 GGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 GGGATTTGGAGACCCCTGCCCAGGGACCACCGACCCACCACCGGGAGGTAAGCTGGCCAG 660
Query: 663 CAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTC 722
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 CAACCTATCTGTGTCTGTCCGATTGTCTAGTGTCTATGTTTGATGTTATGCGCCTGCGTC 720
Query: 723 TGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 TGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGGAACTGACGAGTTCT 780
Query: 783 GAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCC 842
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 GAACACCCGGCCGCAACCCAGGGAGACGTCCCAGGGACTTTGGGGGCCGTTTTTGTGGCC 840
Query: 843 CGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGG 885
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 CGACCTGAGGAAGGGAGTCGATGTGGAATCCGACCCCGTCAGG 883
Score = 2755 (761.3 bits), Expect = 0.0, Sum P(2) = 0.0
Identities = 563/578 (97%), Positives = 563/578 (97%), Strand = Plus / Plus
Query: 885 GATATGTGGTTCTGGTAGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTT 944
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 GGTATGTGGTTCTGGTAGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTTT 941
Query: 945 TGCTTTCGGTTTGGAACCGAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGT 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 TGCTTTCGGTTTGGAACCGAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGT 1001
Query: 1005 CTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCCC 1064
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1002 CTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATATGGGCCAGACTGTTACCACTCCC 1061
Query: 1065 TTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGTA 1124
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1062 TTAAGTTTGACCTTAGATCACTGGAAAGATGTCGAGCGGCTCGCTCACAACCAGTCGGTA 1121
Query: 1125 GATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTC 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 GATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTC 1181
Query: 1185 GGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTC 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 GGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTC 1241
Query: 1245 TTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCC 1304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1242 TTTTCACCTGGCCCGCATGGACACCCAGACCAAGTCCCCTACATCGTGACCTGGGAAGCC 1301
Query: 1305 TTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCT 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1302 TTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCT 1361
Query: 1365 CTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGATCC 1424
|||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 1362 CTTCTTCCATCCGCGCCGTCTCTCCCCCTTGAACCTCCTCTTTCGACCCCGCCTCAATCC 1421
Query: 1425 TCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCGGGAA 1462
|||||||||||||||||||| |||||| | |||| ||
Sbjct: 1422 TCCCTTTATCCAGCCCTCACGCCTTCTTTGGGCGCCAA 1459
Score = 2925 (808.2 bits), Expect = 3.3e-232, P = 3.3e-232
Identities = 585/585 (100%), Positives = 585/585 (100%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGG 5303
Query: 63 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 AAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTG 5363
Query: 123 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 AATACCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGA 5423
Query: 183 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5424 TGAGACAGCTGAGTGATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCT 5483
Query: 243 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5484 CGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATC 5543
Query: 303 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5544 ATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTA 5603
Query: 363 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5604 ACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAG 5663
Query: 423 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5664 AGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCC 5723
Query: 483 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5724 GTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGG 5783
Query: 543 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCA 587
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5784 AGGGTCTCCTCTGAGTGATTGACTACCCACGACGGGGGTCTTTCA 5828
gb|M96854|MMSAAX Moloney murine sarcoma virus gene sequence.
Length = 4382
Plus Strand HSPs:
Score = 220 (60.8 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 44/44 (100%), Positives = 44/44 (100%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCC 46
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCC 47
Score = 4038 (1115.8 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 810/813 (99%), Positives = 810/813 (99%), Strand = Plus / Plus
Query: 39 GTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCA 98
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 48 GTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCA 107
Query: 99 AGGTCAGGAACAAAGAAACAGCTGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 AGGTCAGGAACAAAGAAACAGCTGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTG 167
Query: 159 CCCCGGCTCAGGGCCAAGAACAGATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTG 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 CCCCGGCTCAGGGCCAAGAACAGATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTG 227
Query: 219 TGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCA 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 TGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCA 287
Query: 279 GCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAA 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 GCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAA 347
Query: 339 TGACCCTGTACCTTATTTGAACTAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 TGACCCTGTACCTTATTTGAACTAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCT 407
Query: 399 TCCGCTCTCCGAGCTCAATAAAAGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCG 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 TCCGCTCTCCGAGCTCAATAAAAGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCG 467
Query: 459 ATAGACTGCGTCGCCCGGGTACCCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ATAGACTGCGTCGCCCGGGTACCCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGA 527
Query: 519 ATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGG 587
Query: 579 GGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 GGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCGACCC 647
Query: 639 ACCACCGGGAGGTAAGCTGGCCAGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ACCACCGGGAGGTAAGCTGGCCAGCAACTTATCTGTGTCTGTCCGATTGTCTAGTGTCTA 707
Query: 699 TGTTTGATGTTATGCGCCTGCGTCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 TGTTTGATGTTATGCGCCTGCGTCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGA 767
Query: 759 CCCGTGGTGGAACTGACGAGTTCTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGG 818
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 768 CCCGTGGTGGAACTGACGAGTTCTGAACACCCGGCCGCGACCCTGGGAGACGTCCCAGGG 827
Query: 819 ACTTTGGGGGCCGTTTTTGTGGCCCGACCTGAG 851
|||| ||||||||||||||||||||||||||||
Sbjct: 828 ACTTCGGGGGCCGTTTTTGTGGCCCGACCTGAG 860
Score = 2787 (770.1 bits), Expect = 0.0, Sum P(3) = 0.0
Identities = 567/579 (97%), Positives = 567/579 (97%), Strand = Plus / Plus
Query: 884 GGATATGTGGTTCTGGTAGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 GGATATGTGGTTCTGGTAGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTT 972
Query: 944 TTGCTTTCGGTTTGGAACCGAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 TTGCTTTCGGTTTGGAACCGAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTG 1032
Query: 1004 TCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCC 1063
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 1033 TCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATATGGGCCAGACCGTTACCACTCC 1092
Query: 1064 CTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGT 1123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 CTTAAGTTTGACCTTAGATCACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGT 1152
Query: 1124 AGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGT 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1153 AGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGT 1212
Query: 1184 CGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1213 CGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGT 1272
Query: 1244 CTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGC 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1273 CTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGC 1332
Query: 1304 CTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCC 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1333 CTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCC 1392
Query: 1364 TCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGATC 1423
||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 1393 TCTTCTTCCATCCGCGCCGTCTCTCCCCCTTGAACCTCCTCTTTCGACCCCGCCTCAATC 1452
Query: 1424 CTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCGGGAA 1462
|||||||||||||||||||||||||||| | |||| ||
Sbjct: 1453 CTCCCTTTATCCAGCCCTCACTCCTTCTTTGGGCGCCAA 1491
Score = 220 (60.8 bits), Expect = 7.4e-227, Sum P(2) = 7.4e-227
Identities = 44/44 (100%), Positives = 44/44 (100%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCC 46
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3788 TGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCC 3831
Score = 2746 (758.8 bits), Expect = 7.4e-227, Sum P(2) = 7.4e-227
Identities = 550/551 (99%), Positives = 550/551 (99%), Strand = Plus / Plus
Query: 39 GTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCA 98
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3832 GTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAATAGAAAAGTTCAGATCA 3891
Query: 99 AGGTCAGGAACAAAGAAACAGCTGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3892 AGGTCAGGAACAAAGAAACAGCTGAATACCAAACAGGATATCTGTGGTAAGCGGTTCCTG 3951
Query: 159 CCCCGGCTCAGGGCCAAGAACAGATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTG 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3952 CCCCGGCTCAGGGCCAAGAACAGATGAGACAGCTGAGTGATGGGCCAAACAGGATATCTG 4011
Query: 219 TGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCA 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4012 TGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCA 4071
Query: 279 GCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAA 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4072 GCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAA 4131
Query: 339 TGACCCTGTACCTTATTTGAACTAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4132 TGACCCTGTACCTTATTTGAACTAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCT 4191
Query: 399 TCCGCTCTCCGAGCTCAATAAAAGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCG 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4192 TCCGCTCTCCGAGCTCAATAAAAGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCG 4251
Query: 459 ATAGACTGCGTCGCCCGGGTACCCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4252 ATAGACTGCGTCGCCCGGGTACCCGTATTCCCAATAAAGCCTCTTGCTGTTTGCATCCGA 4311
Query: 519 ATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4312 ATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTACCCACGACGGG 4371
Query: 579 GGTCTTTCATT 589
|||||||||||
Sbjct: 4372 GGTCTTTCATT 4382
emb|AJ224004|RVPSF1NBH Retroviral vector plasmid pSF1 (NBH) DNA (5138bp)
Length = 5138
Plus Strand HSPs:
Score = 96 (26.5 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3 TGAAAGACCCCACCTGTAGGT 23
Score = 211 (58.3 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 43/44 (97%), Positives = 43/44 (97%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAA 66
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 25 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAA 68
Score = 262 (72.4 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 58/65 (89%), Positives = 58/65 (89%), Strand = Plus / Plus
Query: 62 GAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCT 121
| ||||||||||||||||||||| |||||||||||||||| ||||||| ||| |||||
Sbjct: 63 GGAAAATACATAACTGAGAATAGAGAAGTTCAGATCAAGGTTAGGAACAGAGAGACAGCA 122
Query: 122 GAATA 126
|||||
Sbjct: 123 GAATA 127
Score = 176 (48.6 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 36/37 (97%), Positives = 36/37 (97%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCG 163
|||||||||||||||||||||||| ||||||||||||
Sbjct: 132 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCG 168
Score = 1235 (341.3 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 259/274 (94%), Positives = 259/274 (94%), Strand = Plus / Plus
Query: 236 CCCGGCTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTA 295
||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 164 CCCCGCTCAGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCCGCCCTCAGCAGTTTCTA 223
Query: 296 GTGAATCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATT 355
| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 224 GAGAACCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTGCCTTATT 283
Query: 356 TGAACTAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCA 415
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 284 TGAACTAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCA 343
Query: 416 ATAAAAGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCG 475
|||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct: 344 ATAAAAGAGCCCACAACCCCTCACTCGGCGCGCCAGTCCTCCGATTGACTGAGTCGCCCG 403
Query: 476 GGTACCCGTATTCCCAATAAAGCCTCTTGCTGTT 509
||||||||| ||| ||||||| |||||||| |||
Sbjct: 404 GGTACCCGTGTTCTCAATAAACCCTCTTGCAGTT 437
Score = 551 (152.3 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 123/139 (88%), Positives = 123/139 (88%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||| |
Sbjct: 436 TTGCATCCGACTCGTGGTCTCGCTGATCCTTGGGAGGGTCTCCTCAGATTGATTGACTGC 495
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGA 628
|||| |||||||||||||||||| || || ||| ||||||||||||||||||||||||
Sbjct: 496 CCACCTCGGGGGTCTTTCATTTGGAGGTTCCACCGAGATTTGGAGACCCCTGCCCAGGGA 555
Query: 629 CCACCGACCCACCACCGGG 647
|||||||||| || | ||
Sbjct: 556 CCACCGACCCCCCCGCCGG 574
Score = 453 (125.2 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 113/141 (80%), Positives = 113/141 (80%), Strand = Plus / Plus
Query: 709 TATGCGCCTGCGTCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGG 768
| |||||||||||||||||||||| ||||||||| |||||||||||||| |||| || |
Sbjct: 645 TTTGCGCCTGCGTCTGTACTAGTTGGCTAACTAGATCTGTATCTGGCGGTCCCGCGGAAG 704
Query: 769 AACTGACGAGTTCTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGG 828
||||||||||||| | || | | |||||||||||||||||| | | | |||||
Sbjct: 705 AACTGACGAGTTCGTATTCCCGGCCGCAGCCCCTGGGAGACGTCCCAGCGGCCTCGGGGG 764
Query: 829 CCGTTTTTGTGGCCCGACCTG 849
|| ||||||||||| |||
Sbjct: 765 CCCGTTTTGTGGCCCATTCTG 785
Score = 2471 (682.8 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 503/514 (97%), Positives = 503/514 (97%), Strand = Plus / Plus
Query: 958 GAACCGAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTG 1017
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 GAAACCGCGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTG 976
Query: 1018 TGTTTCTGTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 TGTTTCTGTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCT 1036
Query: 1078 TAGGTCACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 TAGGTCACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGA 1096
Query: 1138 GACGTTGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 GACGTTGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAG 1156
Query: 1198 ACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 ACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCC 1216
Query: 1258 CGCATGGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACC 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 CGCATGGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACC 1276
Query: 1318 CCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 CCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCG 1336
Query: 1378 CCCCGTCTCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 CCCCGTCTCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAG 1396
Query: 1438 CCCTCACTCCTTCTCTAGGCGGGAATTCGTTAGC 1471
||||||||||||||||||||| | || | ||
Sbjct: 1397 CCCTCACTCCTTCTCTAGGCGCCACCGCGGTGGC 1430
Score = 96 (26.5 bits), Expect = 9.7e-117, Sum P(4) = 9.7e-117
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 1566 TGAAAGACCCCACCTGTAGGT 1586
Score = 352 (97.3 bits), Expect = 9.7e-117, Sum P(4) = 9.7e-117
Identities = 84/101 (83%), Positives = 84/101 (83%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||| |||||||||| |||||||||||||||||||||| ||| |||||
Sbjct: 1588 TGGCAAGCTAGCTGCAGTAACGCCATTTTGCAAGGCATGGAAAAATACCAAACCAAGAAT 1647
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCTGA 123
|| ||||||||||||||| | || ||| ||| |||| |
Sbjct: 1648 AGAGAAGTTCAGATCAAGGGCGGGTACATGAAAATAGCTAA 1688
Score = 287 (79.3 bits), Expect = 9.7e-117, Sum P(4) = 9.7e-117
Identities = 63/70 (90%), Positives = 63/70 (90%), Strand = Plus / Plus
Query: 197 GATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACA 256
| |||||||||||||||||||| ||| ||||||| | |||||||| ||||||||||||||
Sbjct: 1690 GTTGGGCCAAACAGGATATCTGCGGTGAGCAGTTTCGGCCCCGGCCCGGGGCCAAGAACA 1749
Query: 257 GATGGTCCCC 266
||||||| ||
Sbjct: 1750 GATGGTCACC 1759
Score = 1090 (301.2 bits), Expect = 9.7e-117, Sum P(4) = 9.7e-117
Identities = 246/281 (87%), Positives = 246/281 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || |||| | | | ||||||||||| ||||||||||| |||||||||||
Sbjct: 1846 TTTCCAGGCTCCCCCAAGGACCTGAAATGACCCTGCGCCTTATTTGAATTAACCAATCAG 1905
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
|||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||
Sbjct: 1906 CCTGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTTCCCGAGCTCTATAAAAGAGCTCACAA 1965
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct: 1966 CCCCTCACTCGGCGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTATTCCCA 2025
Query: 492 ATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCC 551
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 2026 ATAAAGCCTCTTGCTGTTTGCATCCGAATCGTGGACTCGCTGATCCTTGGGAGGGTCTCC 2085
Query: 552 TCTGAGTGATTGACTACCCACGACGGGGGTCTTTCATTTGG 592
|| || ||||||||| ||||| ||||||||||||| | ||
Sbjct: 2086 TCAGATTGATTGACTGCCCACCTCGGGGGTCTTTCAGTAGG 2126
Score = 227 (62.7 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 51/58 (87%), Positives = 51/58 (87%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||| ||| ||| ||| | |||||||| | ||||||||||||||||
Sbjct: 1696 CCAAACAGGATATCTGCGGTGAGCAGTTTCGGCCCCGGCCCGGGGCCAAGAACAGATG 1753
Score = 430 (118.8 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 98/113 (86%), Positives = 98/113 (86%), Strand = Plus / Plus
Query: 225 GCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTC 284
|||||| | |||||||| || ||||||||||||||||||||||||| || ||| |||||
Sbjct: 1760 GCAGTTTCGGCCCCGGCCCGAGGCCAAGAACAGATGGTCCCCAGATATGGCCCAACCCTC 1819
Query: 285 AGCAGTTTCTAGTGAATCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAA 337
|||||||||| || ||||||||||||||||| | ||||||||||||||||
Sbjct: 1820 AGCAGTTTCTTAAGACCCATCAGATGTTTCCAGGCTCCCCCAAGGACCTGAAA 1872
Score = 211 (58.3 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
Identities = 47/53 (88%), Positives = 47/53 (88%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCA 250
|||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 127 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGCTCAGGGCCAA 179
Score = 140 (38.7 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
Identities = 36/46 (78%), Positives = 36/46 (78%), Strand = Plus / Plus
Query: 636 CCCACCACCGGGAGGTAAGCTGGCCAGCAACTTATCTGTGTCTGTC 681
||| || ||||||||||||||||||||| | |||||||||
Sbjct: 564 CCCCCCGCCGGGAGGTAAGCTGGCCAGCGGTCGTTTCGTGTCTGTC 609
Score = 283 (78.2 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
Identities = 75/98 (76%), Positives = 75/98 (76%), Strand = Plus / Plus
Query: 884 GGATATGTGGTTCTGGTAGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTT 943
|| || |||| | || | || ||||||| | | ||| |||||||| ||||||||||||
Sbjct: 838 GGGTACGTGGCTTTGTTGGGGGACGAGAGACAGAGACACTTCCCGCCCCCGTCTGAATTT 897
Query: 944 TTGCTTTCGGTTTGGAACCGAAGCCGCGCGTCTTGTCT 981
||||||||||||| ||||| |||||| | ||||
Sbjct: 898 TTGCTTTCGGTTTTACGCCGAAACCGCGCCGCGCGTCT 935
gb|AF010170|AF010170 Plasmid pAMS with hybrid amphotropic/Moloney
murine leukemia virus, complete sequence
Length = 11,328
Plus Strand HSPs:
Score = 524 (144.8 bits), Expect = 0.0, Sum P(5) = 0.0
Identities = 108/112 (96%), Positives = 108/112 (96%), Strand = Plus / Plus
Query: 1 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCAT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 145 TTTGAAAGACCCCACCCGTAGGTGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCAT 204
Query: 61 GGAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 205 GGAAAAATACATAACTGAGAATAGAGAAGTTCAGATCAAGGTCAGGAACAGA 256
Score = 319 (88.1 bits), Expect = 0.0, Sum P(5) = 0.0
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 276 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 335
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 336 ACAGCTGAATATGGGCCAAA 355
Score = 765 (211.4 bits), Expect = 0.0, Sum P(5) = 0.0
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 459 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 518
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 519 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 578
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 579 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 638
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 639 ATAAACCCTCTTGCAGTT 656
Score = 1313 (362.8 bits), Expect = 0.0, Sum P(5) = 0.0
Identities = 269/277 (97%), Positives = 269/277 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 722 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 781
Query: 635 ACCCACCACCGGGAGGTAAGCTGGCCAGCAACTTATCTGTGTCTGTCCGATTGTCTAGTG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ACCCACCACCGGGAGGTAAGCTGGCCAGCAACTTATCTGTGTCTGTCCGATTGTCTAGTG 841
Query: 695 TCTATGTTTGATGTTATGCGCCTGCGTCTGTACTAGTTAGCTAACTAGCTCTGTATCTGG 754
|||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 842 TCTATGACTGATTTTATGCGCCTGCGTCGGTACTAGTTAGCTAACTAGCTCTGTATCTGG 901
Query: 755 CGGACCCGTGGTGGAACTGACGAGTTCTGAACACCCGGCCGCAACCCTGGGAGACGTCCC 814
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 902 CGGACCCGTGGTGGAACTGACGAGTTCGGAACACCCGGCCGCAACCCTGGGAGACGTCCC 961
Query: 815 AGGGACTTTGGGGGCCGTTTTTGTGGCCCGACCTGAG 851
|||||||| ||||||||||||||||||||||||||||
Sbjct: 962 AGGGACTTCGGGGGCCGTTTTTGTGGCCCGACCTGAG 998
Score = 2456 (678.6 bits), Expect = 0.0, Sum P(5) = 0.0
Identities = 504/520 (96%), Positives = 504/520 (96%), Strand = Plus / Plus
Query: 943 TTTGCTTTCGGTTTGGAACCGAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTT 1002
||| || || ||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 1114 TTTCGGTTTGGGACCGAAGCCGCGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTT 1173
Query: 1003 GTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTC 1062
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1174 GTCTCTGTCTGACTGTGTTTCTGTATTTGTCTGAAAATATGGGCCAGACTGTTACCACTC 1233
Query: 1063 CCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 CCTTAAGTTTGACCTTAGGTCACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGG 1293
Query: 1123 TAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 TAGATGTCAAGAAGAGACGTTGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACG 1353
Query: 1183 TCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGG 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 TCGGATGGCCGCGAGACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGG 1413
Query: 1243 TCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAG 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 TCTTTTCACCTGGCCCGCATGGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAG 1473
Query: 1303 CCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTC 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 CCTTGGCTTTTGACCCCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTC 1533
Query: 1363 CTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGAT 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 CTCTTCCTCCATCCGCCCCGTCTCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGAT 1593
Query: 1423 CCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCGGGAA 1462
|||||||||||||||||||||||||||||||||||| ||
Sbjct: 1594 CCTCCCTTTATCCAGCCCTCACTCCTTCTCTAGGCGCCAA 1633
Score = 96 (26.5 bits), Expect = 1.0e-122, Sum P(5) = 1.0e-122
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 8376 TGAAAGACCCCACCTGTAGGT 8396
Score = 414 (114.4 bits), Expect = 1.0e-122, Sum P(5) = 1.0e-122
Identities = 86/90 (95%), Positives = 86/90 (95%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 8398 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAAATACATAACTGAGAAT 8457
Query: 83 AGGAAAGTTCAGATCAAGGTCAGGAACAAA 112
|| |||||||||||||||||||||||| |
Sbjct: 8458 AGAGAAGTTCAGATCAAGGTCAGGAACAGA 8487
Score = 319 (88.1 bits), Expect = 1.0e-122, Sum P(5) = 1.0e-122
Identities = 71/80 (88%), Positives = 71/80 (88%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGAG 186
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8507 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATGGA 8566
Query: 187 ACAGCTGAGTGATGGGCCAA 206
|||||||| | || | ||
Sbjct: 8567 ACAGCTGAATATGGGCCAAA 8586
Score = 765 (211.4 bits), Expect = 1.0e-122, Sum P(5) = 1.0e-122
Identities = 173/198 (87%), Positives = 173/198 (87%), Strand = Plus / Plus
Query: 312 TTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATTTGAACTAACCAATCAG 371
|| | || ||| | | | |||||||||||| |||||||||||||||||||||||
Sbjct: 8690 TTTCCAGGGTGCCCCAAGGACCTGAAATGACCCTGTGCCTTATTTGAACTAACCAATCAG 8749
Query: 372 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCAATAAAAGAGCCCACAA 431
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 8750 TTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCAATAAAAGAGCCCACAA 8809
Query: 432 CCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCGGGTACCCGTATTCCCA 491
|||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||
Sbjct: 8810 CCCCTCACTCGGGGCGCCAGTCCTCCGATTGACTGAGTCGCCCGGGTACCCGTGTATCCA 8869
Query: 492 ATAAAGCCTCTTGCTGTT 509
||||| |||||||| |||
Sbjct: 8870 ATAAACCCTCTTGCAGTT 8887
Score = 407 (112.5 bits), Expect = 1.0e-122, Sum P(5) = 1.0e-122
Identities = 83/85 (97%), Positives = 83/85 (97%), Strand = Plus / Plus
Query: 575 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGACCACCG 634
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8953 CGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATCGGGAGACCCCTGCCCAGGGACCACCG 9012
Query: 635 ACCCACCACCGGGAGGTAAGCTGGC 659
|||||||||||||||||||||||||
Sbjct: 9013 ACCCACCACCGGGAGGTAAGCTGGC 9037
Score = 281 (77.6 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 351 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 408
Score = 673 (186.0 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8577 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 8636
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 8637 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 8696
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 8697 GGTGCCCCAAGGACCTGAAA 8716
Score = 309 (85.4 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8886 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 8945
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 8946 CCGTCAGCGGGGGTCTTTCATTTGGGG 8972
Score = 281 (77.6 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 57/58 (98%), Positives = 57/58 (98%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8582 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAGATG 8639
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 271 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 330
Query: 258 ATGG 261
||||
Sbjct: 331 ATGG 334
Score = 673 (186.0 bits), Expect = 1.2e-90, Sum P(3) = 1.2e-90
Identities = 137/140 (97%), Positives = 137/140 (97%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 346 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 405
Query: 258 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGTGAATCATCAGATGTTTCCAG 317
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 406 ATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTAGAGAACCATCAGATGTTTCCAG 465
Query: 318 GGTGCCCCAAGGACCTGAAA 337
||||||||||||||||||||
Sbjct: 466 GGTGCCCCAAGGACCTGAAA 485
Score = 309 (85.4 bits), Expect = 1.2e-90, Sum P(3) = 1.2e-90
Identities = 73/87 (83%), Positives = 73/87 (83%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 TTGCATCCGACTTGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 714
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGG 595
|| | |||| || || ||||
Sbjct: 715 CCGTCAGCGGGGGTCTTTCATTTGGGG 741
Score = 445 (123.0 bits), Expect = 1.2e-90, Sum P(3) = 1.2e-90
Identities = 93/98 (94%), Positives = 93/98 (94%), Strand = Plus / Plus
Query: 884 GGATATGTGGTTCTGGTAGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 GGATATGTGGTTCTGGTAGGAGACGAGAACCTAAAACAGTTCCCGCCTCCGTCTGAATTT 1109
Query: 944 TTGCTTTCGGTTTGGAACCGAAGCCGCGCGTCTTGTCT 981
||||||||||||||| ||||||||||||| | ||||
Sbjct: 1110 TTGCTTTCGGTTTGGGACCGAAGCCGCGCCGCGCGTCT 1147
Score = 311 (85.9 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 63/64 (98%), Positives = 63/64 (98%), Strand = Plus / Plus
Query: 198 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCGGGGCCAAGAACAG 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8502 ATGGGCCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCGGCTCAGGGCCAAGAACAG 8561
Query: 258 ATGG 261
||||
Sbjct: 8562 ATGG 8565
emb|AJ224005|RVPSF1PSN Retroviral vector plasmid pSF1 (PSNEBH) DNA (5154bp)
Length = 5154
Plus Strand HSPs:
Score = 96 (26.5 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 20/21 (95%), Positives = 20/21 (95%), Strand = Plus / Plus
Query: 3 TGAAAGACCCCACCCGTAGGT 23
|||||||||||||| ||||||
Sbjct: 3 TGAAAGACCCCACCTGTAGGT 23
Score = 211 (58.3 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 43/44 (97%), Positives = 43/44 (97%), Strand = Plus / Plus
Query: 23 TGGCAAGCTAGCTTAAGTAACGCCACTTTGCAAGGCATGGAAAA 66
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 25 TGGCAAGCTAGCTTAAGTAACGCCATTTTGCAAGGCATGGAAAA 68
Score = 262 (72.4 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 58/65 (89%), Positives = 58/65 (89%), Strand = Plus / Plus
Query: 62 GAAAAATACATAACTGAGAATAGGAAAGTTCAGATCAAGGTCAGGAACAAAGAAACAGCT 121
| ||||||||||||||||||||| |||||||||||||||| ||||||| ||| |||||
Sbjct: 63 GGAAAATACATAACTGAGAATAGAGAAGTTCAGATCAAGGTTAGGAACAGAGAGACAGCA 122
Query: 122 GAATA 126
|||||
Sbjct: 123 GAATA 127
Score = 176 (48.6 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 36/37 (97%), Positives = 36/37 (97%), Strand = Plus / Plus
Query: 127 CCAAACAGGATATCTGTGGTAAGCGGTTCCTGCCCCG 163
|||||||||||||||||||||||| ||||||||||||
Sbjct: 132 CCAAACAGGATATCTGTGGTAAGCAGTTCCTGCCCCG 168
Score = 1235 (341.3 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 259/274 (94%), Positives = 259/274 (94%), Strand = Plus / Plus
Query: 236 CCCGGCTCGGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCAGCCCTCAGCAGTTTCTA 295
||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 164 CCCCGCTCAGGGCCAAGAACAGATGGTCCCCAGATGCGGTCCCGCCCTCAGCAGTTTCTA 223
Query: 296 GTGAATCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTACCTTATT 355
| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 224 GAGAACCATCAGATGTTTCCAGGGTGCCCCAAGGACCTGAAAATGACCCTGTGCCTTATT 283
Query: 356 TGAACTAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCCGCTCTCCGAGCTCA 415
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 284 TGAACTAACCAATCAGTTCGCTTCTCGCTTCTGTTCGCGCGCTTCTGCTCCCCGAGCTCA 343
Query: 416 ATAAAAGAGCCCACAACCCCTCACTCGGCGCGCCAGTCTTCCGATAGACTGCGTCGCCCG 475
|||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct: 344 ATAAAAGAGCCCACAACCCCTCACTCGGCGCGCCAGTCCTCCGATTGACTGAGTCGCCCG 403
Query: 476 GGTACCCGTATTCCCAATAAAGCCTCTTGCTGTT 509
||||||||| ||| ||||||| |||||||| |||
Sbjct: 404 GGTACCCGTGTTCTCAATAAACCCTCTTGCAGTT 437
Score = 551 (152.3 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 123/139 (88%), Positives = 123/139 (88%), Strand = Plus / Plus
Query: 509 TTGCATCCGAATCGTGGTCTCGCTGTTCCTTGGGAGGGTCTCCTCTGAGTGATTGACTAC 568
|||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||| |
Sbjct: 436 TTGCATCCGACTCGTGGTCTCGCTGATCCTTGGGAGGGTCTCCTCAGATTGATTGACTGC 495
Query: 569 CCACGACGGGGGTCTTTCATTTGGGGGCTCGTCCGGGATTTGGAGACCCCTGCCCAGGGA 628
|||| |||||||||||||||||| || || ||| ||||||||||||||||||||||||
Sbjct: 496 CCACCTCGGGGGTCTTTCATTTGGAGGTTCCACCGAGATTTGGAGACCCCTGCCCAGGGA 555
Query: 629 CCACCGACCCACCACCGGG 647
|||||||||| || | ||
Sbjct: 556 CCACCGACCCCCCCGCCGG 574
Score = 453 (125.2 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 113/141 (80%), Positives = 113/141 (80%), Strand = Plus / Plus
Query: 709 TATGCGCCTGCGTCTGTACTAGTTAGCTAACTAGCTCTGTATCTGGCGGACCCGTGGTGG 768
| |||||||||||||||||||||| ||||||||| |||||||||||||| |||| || |
Sbjct: 645 TTTGCGCCTGCGTCTGTACTAGTTGGCTAACTAGATCTGTATCTGGCGGTCCCGCGGAAG 704
Query: 769 AACTGACGAGTTCTGAACACCCGGCCGCAACCCTGGGAGACGTCCCAGGGACTTTGGGGG 828
||||||||||||| | || | | |||||||||||||||||| | | | |||||
Sbjct: 705 AACTGACGAGTTCGTATTCCCGGCCGCAGCCCCTGGGAGACGTCCCAGCGGCCTCGGGGG 764
Query: 829 CCGTTTTTGTGGCCCGACCTG 849
|| ||||||||||| |||
Sbjct: 765 CCCGTTTTGTGGCCCATTCTG 785
Score = 2451 (677.3 bits), Expect = 0.0, Sum P(8) = 0.0
Identities = 507/528 (96%), Positives = 507/528 (96%), Strand = Plus / Plus
Query: 958 GAACCGAAGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTG 1017
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 GAAACCGCGCCGCGCGTCTTGTCTGCTGCAGCATCGTTCTGTGTTGTCTCTGTCTGACTG 976
Query: 1018 TGTTTCTGTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 TGTTTCTGTATTTGTCTGAAAATTAGGGCCAGACTGTTACCACTCCCTTAAGTTTGACCT 1036
Query: 1078 TAGGTCACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGA 1137
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 TAGATCACTGGAAAGATGTCGAGCGGATCGCTCACAACCAGTCGGTAGATGTCAAGAAGA 1096
Query: 1138 GACGTTGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAG 1197
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 GACGATGGGTTACCTTCTGCTCTGCAGAATGGCCAACCTTTAACGTCGGATGGCCGCGAG 1156
Query: 1198 ACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 ACGGCACCTTTAACCGAGACCTCATCACCCAGGTTAAGATCAAGGTCTTTTCACCTGGCC 1216
Query: 1258 CGCATGGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACC 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 CGCATGGACACCCAGACCAGGTCCCCTACATCGTGACCTGGGAAGCCTTGGCTTTTGACC 1276
Query: 1318 CCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 CCCCTCCCTGGGTCAAGCCCTTTGTACACCCTAAGCCTCCGCCTCCTCTTCCTCCATCCG 1336
Query: 1378 CCCCGTCTCTCCCCCTTGAACCTCCTCGTTCGACCCCGCCTCGATCCTCCCTTTATCCAG 1437
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1337 CCCCGTCTCTCCCCCTTGAACCTCCTCTTTCGACCCCGCCTCGATCCTCCCTTTATCCAG 1396
Query: 1438 CCCTCACTCCTTCTCTAGGCGGGAATTCGTTAGCTTGGTAAGTGACCA 1485
||||||||||||||||||||| | || | | | |||| | | |
Sbjct: 1397 CCCTCACTCCTTCTCTAGGCGCCACCGCGGTGGTTAATTAAGCGTCGA 1444
Score = 96 (26.5 bits), Expect = 1.