3DB Atlas for 1BBH
1BBH Electron Transport(Heme Protein) date May 18, 1992
authors Z.Ren, T.Meyer, D.E.Mcree
compound source
Cytochrome C'
 Chromatium Vinosum
symmetry Space Group: P 21 21 21
R_factor 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.200 56.700 98.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.8 Å
ligand HEM
note is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] [Save to disk]
  • LPC: Ligand-Protein Contacts for 1BBH
  • CSU: Contacts of Structural Units for 1BBH
  • Likely Quarternary Molecular Structure file(s) for 1BBH
  • Retrieve 1BBH in mmCIF format
    • View 1BBH in 3D
  • MDL's Chemscape Chime (Install Chime freeware) This is good for easiest viewing of basic structure.
  • RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1BBH
  • STING, shows the sequence and maps the locations of sequence residues or residue ranges onto the 3D structure.
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • GRASS (Graphical Representation and Analysis of Structure Server)
    • View 1BBH in 2D
  • Topology of domains/folds: Chain: A, Chain: B from TOPS (The Atlas of protein topology cartoons )
    • Structure-derived information
  • Classification of representative domains in scop (Structural Classification of Proteins)
    - Domain d1bbha_, region a [rasmolscript] [script source]
    - Domain d1bbhb_, region b [rasmolscript] [script source]
  • Protein Family Cores from LPFC
    - Family: 2mhr, Alignment Method: FSSP- Family: 1lpe, Alignment Method: FSSP
  • Domain Definition for 1bbh from 3Dee ( The Database of Protein Domain Definitions )
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily: CATH
  • Summaries and structural analyses of PDB data files: PDBSum
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bbh_A] [1bbh_B]
  • SWISS-PROT database: [CYCP_CHRVI]
  • Alignments of the sequence of 1BBH with the sequences similar proteins can be viewed for classification [CYCP_CHRVI] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CYCP_CHRVI] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1BBH
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • MMDB (Entrez's Structure Database)
    • Still Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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