3DB Atlas for 1MRC
1MRC Immunoglobulin date Jun 13, 1994
authors P.R.Pokkuluri, F.Bouthillier, Y.Li, A.Kuderova, J.Lee, M.Cygler
compound source
Igg Jel 103 Fab Fragment
Mouse (Mus Musculus)
symmetry Space Group: P 21 21 21
R_factor 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.400 75.700 106.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.4 Å
ligand ZN, IMD, SO4
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] [Save to disk]
  • LPC: Ligand-Protein Contacts for 1MRC
  • CSU: Contacts of Structural Units for 1MRC
  • Likely Quarternary Molecular Structure file(s) for 1MRC
  • Structure Factors in CIF format (r1mrcsf.ent.Z), size 167 Kb
  • Retrieve 1MRC in mmCIF format
  • View 1MRC in 3D
  • MDL's Chemscape Chime (Install Chime freeware) This is good for easiest viewing of basic structure.
  • RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 1MRC
  • STING, shows the sequence and maps the locations of sequence residues or residue ranges onto the 3D structure.
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • GRASS (Graphical Representation and Analysis of Structure Server)
  • View 1MRC in 2D
  • Topology of domains/folds: Chain: H, Chain: L from TOPS (The Atlas of protein topology cartoons )
  • Structure-derived information
  • Classification of representative domains in scop (Structural Classification of Proteins)
    - Domain d1mrch1, region h:1-115 [rasmolscript] [script source]
    - Domain d1mrch2, region h:116-227 [rasmolscript] [script source]
    - Domain d1mrcl1, region l:1-108 [rasmolscript] [script source]
    - Domain d1mrcl2, region l:109-211 [rasmolscript] [script source]
  • Domain Definition for 1mrc from 3Dee ( The Database of Protein Domain Definitions )
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily: CATH
  • Summaries and structural analyses of PDB data files: PDBSum
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mrc_H] [1mrc_L]
  • Other resources with information on 1MRC
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • MMDB (Entrez's Structure Database)
  • Still Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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