3DB Atlas for 1MSI
1MSI Antifreeze Protein date Oct 08, 1996
title Structure Of Antifreeze Glycoprotein Qae(Hplc 12)
authors Z.Jia, C.I.Deluca, H.Chao, P.L.Davies
compound source
Molecule: Type III Antifreeze Protein Isoform Hplc 12
Chain: Null
Synonym: Type III Antifreeze Protein Qae Isoform
Engineered: Yes
Mutation: P64a, P65a
Organism_scientific: Macrozoarces Americanus
Organism_common: North-Atlantic Ocean Pout
Expression_system: Escherichia Coli
Expression_system_plasmid: Pt7-7f
symmetry Space Group: P 21 21 21
R_factor 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.328 38.893 45.483 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.25 Å
note is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] [Save to disk]
  • Likely Quarternary Molecular Structure file(s) for 1MSI
  • Retrieve 1MSI in mmCIF format
  • View 1MSI in 3D
  • MDL's Chemscape Chime (Install Chime freeware) This is good for easiest viewing of basic structure.
  • RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 1MSI
  • STING, shows the sequence and maps the locations of sequence residues or residue ranges onto the 3D structure.
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • GRASS (Graphical Representation and Analysis of Structure Server)
  • Structure-derived information
  • scop (Structural Classification of Proteins)
  • Domain Definition for 1msi from 3Dee ( The Database of Protein Domain Definitions )
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily: CATH
  • Summaries and structural analyses of PDB data files: PDBSum
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1msi_]
  • SWISS-PROT database: [ANPC_MACAM]
  • Alignments of the sequence of 1MSI with the sequences similar proteins can be viewed for classification [ANPC_MACAM] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ANPC_MACAM] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1MSI
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • MMDB (Entrez's Structure Database)
  • Still Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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