HOMEWORK 5

model building and mutiple sequence alignment

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• Kevin Lyu, same guy from last homework, would also like to know the structure of the protein you translated for him in the last homework.
  • Could you help him to make a model of this protein? Show structure on your homwpage ( at least 3 different rasmol pictures).
  
  
  

• Could you also find at least 10 similar protein from different organisms ? Give the name and sequences of each protein in same size.

  Oryza sativa NONSPECIFIC LIPID-TRANSFER PROTEIN 5 PRECURSOR

  maraghnkyv arvmvvalll aarapvtcgq vvstwapcim yadgegvapt ggccdgvrtl nsaaattadr qttcaclkqq tkamgrlrpd hvagipskcg vnipyaisps tdcsrvh

  bread wheat germ basic protein 1A, WBP1A=lipid transfer protein homolog

  avancgqvvs ylapcisyam grvsvpgggc csgvrglnaa aatpadrktt ctclkqqasg mggikpnlva gipgkcgvni pyaisprtdc skvr

  maize NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSOR

  martqqlavv atavvalvll aaatseaais cgqvasaiap cisyargqgs gpsagccsgv rslnnaartt adrraacncl knaaagvsgl nagnaasips kcgvsipyti ststdcsrvn

  Hordeum vulgare non-specific lipid transfer protein Cw-18 - barley

  martaatkla lvalvaamll vaadaaitcg qvssalgpca ayakgsgtsp sagccsgvkr laglarstad kqatcrclks vagaynagra agipsrcgvs vpytisasvd cskih

  Zea mays phospholipid transfer protein

  martqsavav avvaavllla aaattseaai tcgqvssaia pclsyargtg sgpsasccsg vrnlksaast aadrraacnc lknaargvsg lnagnaasip skcgvsipyt iststdcsrv

  tomato NONSPECIFIC LIPID-TRANSFER PROTEIN 2 PRECURSOR

  memvskiacf vllcmvvvap haealtcgqv taglapclpy lqgrgplggc cggvknllgs akttadrkta ctclksaana ikgidlnkaa gipsvckvni pykispstdc stvq

  almond NONSPECIFIC LIPID-TRANSFER PROTEIN 1 PRECURSOR

  maysamtkla lvvalcmvvs vpiaqaitcg qvssnlapci pyvrgggavp paccngirnv nnlarttpdr qaacnclkql sasvpgvnpn naaalpgkcg vnipyqisps tncanvk

  Lycopersicon pennellii lipid transfer protein 1

  memvskiacf vllcmvvvap haealtcgqv taglapclpy lqgrgplggc cggvkgllgs akttadrkta ctclksaana ikgidlnkaa gipsvckvni pykispstdc stvq

  common tobacco NONSPECIFIC LIPID-TRANSFER PROTEIN 1 PRECURSOR

  meiagkiacf vvlcmvvaap caeaitcgqv tsnlapclay lrntgplgrc cggvkalvns arttedrqia ctclksaaga isginlgkaa glpstcgvni pykispstdc skvq

  Spinacia oleracea NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSOR

  massavikla cavllcivva apyaeagitc gmvssklapc igylkggplg ggccggikal naaaattpdr ktacnclksa anaikginyg kaaglpgmcg vhipyaisps tncnavh

  • Could you do multiple sequence alignment for hime? Show color-coded plot of alignment .

    

  • Please also do the phylogenetic analysis for him