HOMEWORK#3
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- due on 5/5
1.Please find the genes for the protein that you showed the structures in homework
2have .Which organism do these genes come from? How many sequences of DNA and Protein been known for this organism?
ORGANISM:
Oryza sativa(Rice)
69340 nucleotides sequences and 2255 protein sequence
3.How many BLAST hits you can get if you use the gene you found for this protein as the query sequence to search against non-redundant GenBank + EMBL + DDBJ + PDB sequence database? Please also show 10 sequences that produce significant alignments ( you just need to show their names and ID numbers ).
ANS:¦@95 Blast Hits
| Name | ID number |
| phospholipid transfer protein homolog - rice | EPRZ |
| NONSPECIFIC LIPID-TRANSFER PROTEIN 1 PRECURSOR (LTP 1) (PAPI) | P23096 |
| lipid transfer protein LPT IV | AAB70541 |
| phospholipid transfer protein | AAB06443 |
| NONSPECIFIC LIPID-TRANSFER PROTEIN 2 PRECURSOR (LTP 2) | Q43194 |
| NONSPECIFIC LIPID-TRANSFER PROTEIN 2 PRECURSOR (LTP 2) | Q42978 |
| lipid transfer protein LPT II | AAB70539 |
| NONSPECIFIC LIPID-TRANSFER PROTEIN 3 PRECURSOR (LTP 3) | Q42999 |
| NONSPECIFIC LIPID-TRANSFER PROTEIN 1 PRECURSOR (LTP 1) | Q43193 |
| lipid transfer protein - sorghum (fragment) | S33460 |
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