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condense

Daniel Gschwend

condense takes as input a residue list generated by get_near_res and compacts it into a format suitable for an MS -i file (for the UCSF version of MS - for the QCPE MS version, see autoMS). This functionality comes in handy when attempting to generate an MS surface for a portion of a receptor. The program get_near_res can be used to obtain a listing of all receptor atoms within a specified distance of a small molecule, e.g. a crystallographically observed ligand. condense will then reformat and compact the listing to less than 100 entries for compatibility with UCSF MS. This program supports command-line operation: type condense -h for details.


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Curator: Daniel Gschwend, gschwend@cgl.ucsf.edu (rev. 1 September 1995)