Homework 5
Find the information of the protein (Homo sapiens regulatory factor X, 1) that you did for the last homework in the human genome resources:
1. Show its cytogenetic localization.
Ans:19p13.1
2. Which chromosome is it located?
Ans:19
3. Show its nucleotide sequence in Fasta format.
>gi|311362|emb|X58964.1|HSIGRFX H.sapiens gene for MHC class II regulatory factor RFX GCGAAAAGCGTTTCCGCAGACAGAAGTGGGGAGAAGCGGAGGAATTAAAAAAAAAAAAAAGCCTTATTTA TTATCATTTTCCCCACCGTTGGCATGGCAACACAGGCGTATACTGAGCTACAGGCAGCCCCGCCACCATC CCAGCCGCCACAGGCCCCGCCACAAGCCCAGCCCCAGCCGCCACCGCCACCACCCCCAGCGGCACCCCAG CCCCCGCAGCCACCCACCGCTGCTGCCACCCCTCAGCCCCAATATGTCACCGAGCTGCAGAGCCCCCAGC CCCAGGCACAGCCACCGGGTGGCCAGAAGCAGTACGTGACGGAGCTCCCGGCTGTACCCGCACCCTCGCA GCCAACCGGTGCACCCACCCCTTCGCCTGCACCCCAGCAGTACATCGTGGTCACTGTCTCTGAAGGTGCC ATGCGGGCCAGCGAGACAGTGTCGGAGGCCAGCCCCGGCTCCACCGCCAGCCAGACCGGCGTTCCTACTC AGGTGGTTCAGCAGGTGCAGGGCACCCAGCAGCGGCTGCTGGTCCAGACGAGCGTGCAGGCCAAGCCAGG CCACGTGTCGCCCCTCCAGCTGACCAACATCCAAGTGCCCCAGCAGGCTCTTCCCACGCAGCGTCTGGTG GTGCAGAGCGCAGCCCCAGGCAGCAAAGGTGGCCAGGTCTCCCTGACGGTCCATGGTACCCAGCAGGTGC ACTCGCCCCCAGAGCAGTCGCCGGTGCAGGCCAACAGCTCTTCCAGCAAGACAGCCGGGGCCCCCACGGG CACAGTGCCACAGCAGCTGCAGGTCCACGGCGTCCAGCAGAGTGTCCCCGTCACCCAAGAGAGATCTGTG GTCCAGGCCACTCCACAAGCGCCCAAACCCGGCCCGGTGCAGCCGCTGACCGTGCAGGGCCTCCAGCCAG TCCACGTGGCTCAAGAGGTGCAGCAGCTCCAGCAGGTGCCCGTCCCACACGTGTACTCCAGCCAGGTGCA GTATGTGGAGGGCGGCGATGCCAGCTACACGGCCAGTGCCATCCGTTCCAGCACCTACTCCTATCCCGAG ACGCCGCTGTACACGCAGACGGCAAGCACCAGCTACTACGAGGCCGCAGGCACGGCCACCCAGGTCAGCA CCCCCGCCACCTCCCAGGCGGTGGCCAGCAGTGGCTCCATGCCCATGTACGTGTCCGGCAGCCAGGTCGT CGCCAGCTCCGCCAGCACTGGGGCTGGGGCCAGCAACAGCAGCGGAGGTGGTGGCAGTGGTGGTGGCGGC GGCGGCGGGGGAGGCGGTGGCGGGGGTGGCAGTGGCAGCACCGGAGGCGGCGGCAGCGGAGCAGGCACCT ACGTGATCCAAGGCGGCTACATGCTGGGCAGTGCCAGCCAGTCTTACTCTCACACCACCCGTGCCTCGCC AGCCACGGTCCAGTGGCTCCTGGACAACTATGAGACGGCTGAGGGCGTGAGTCTGCCACGGAGCACCCTC TACTGCCACTACTTACTGCACTGCCAGGAGCAGAAGCTGGAGCCCGTCAACGCCGCCTCCTTCGGCAAGC TCATCCGCTCCGTCTTCATGGGCCTGCGAACCCGCCGTCTGGGCACCAGGGGCAACTCCAAGTACCACTA CTATGGCCTGCGCATCAAGGCCAGCTCACCCCTGCTGCGGCTGATGGAGGACCAGCAGCACATGGCCATG CGGGGCCAGCCCTTCTCGCAGAAGCAGAGGCTCAAGCCCATCCAGAAGATGGAAGGCATGACCAACGGCG TGGCGGTGGGGCAGCAGCCGAGCACGGGGCTGTCGGACATCAGCGCCCAGGTGCAGCAGTACCAGCAATT TTTGGATGCCTCTCGGAGCCTCCCTGACTTCACAGAGCTCGACCTCCAGGGCAAGGTGCTGCCTGAGGGC GTCGGGCCCGGGGACATCAAAGCCTTCCAGGTCCTGTACCGGGAACACTGTGAGGCCATTGTCGACGTCA TGGTGAACCTGCAGTTCACCCTGGTGGAGACGCTGTGGAAGACCTTCTGGAGGTACAACCTCAGCCAGCC CAGTGAGGCGCCACCGCTGGCTGTACATGACGAGGCCGAGAAGCGACTGCCCAAAGCCATCCTGGTGCTC CTCTCCAAGTTCGAGCCCGTGCTCCAATGGACCAAGCACTGTGACAACGTGCTGTACCAGGGCCTGGTGG AAATCCTCATTCCCGACGTGCTGCGGCCCATCCCCAGTGCCTTGACCCAAGCGATCCGGAACTTTGCCAA GAGCCTGGAGAGCTGGCTCACCCACGCCATGGTCAACATCCCCGAGGAGATGCTGCGGGTGAAGGTGGCC GCGGCTGGCGCCTTCGCGCAGACACTGCGGCGCTACACGTCGCTCAACCACCTGGCGCAGGCGGCGCGCG CTGTGCTGCAGAACACCGCACAGATCAACCAGATGCTGAGCGACCTCAACCGCGTGGACTTCGCCAACGT GCAGGAGCAGGCCTCGTGGGTGTGCCGCTGCGAGGACCGCGTGGTGCAGCGGCTGGAGCAGGACTTCAAG GTGACGCTGCAGCAGCAGAACTCGCTGGAGCAGTGGGCGGCCTGGCTGGACGGCGTGGTGAGCCAGGTGC TCAAGCCCTACCAGGGCAGCGCCGGCTTCCCCAAGGCCGCCAAGCTCTTCCTCCTCAAGTGGTCCTTCTA CAGCTCCATGGTGATCCGGGACCTGACCCTGCGCAGCGCCGCCAGCTTCGGTTCCTTCCACCTCATCCGG CTGCTCTACGACGAGTACATGTACTACCTGATCGAGCACCGCGTAGCCCAGGCCAAGGGCGAGACCCCCA TCGCCGTCATGGGCGAGTTCGCCAATCTGGCCACCTCCCTGAACCCCCTGGACCCCGACAAAGACGAGGA GGAAGAAGAGGAGGAGGAGAGCGAGGACGAGCTGCCGCAGGACATCTCACTGGCGGCTGGCGGCGAGTCA CCCGCGCTGGGCCCGGAGACCCTGGAGCCGCCGGCCAAGCTGGCGCGGACTGACGCGCGCGGCCTCTTCG TGCAGGCGCTGCCCTCCAGCTAAGCCCTTGGCCTCCCCGCCCCACCCGCCCCCGCCACCCCTCCACGCCA GGGTCC 原網頁
4. Show its protein similarities between selected model organism.
SELECTED MODEL ORGANISM PROTEIN SIMILARITIES
organism, protein and percent identity and length of aligned region
| H. sapiens | SP:P22670 - RFX1_HUMAN MHC CLASS II REGULATORY FACTOR RFX1 |
100 % / 978 aa
|
| M. musculus | SP:P48377 - RFX1_MOUSE DNA BINDING PROTEIN RFX1 |
91 % / 978 aa
|
| R. norvegicus | PIR:CGRT1S - CGRT1S collagen alpha 1(I) chain - rat |
27 % / 511 aa
|
| D. melanogaster | PID:g1916930 - CREB-binding protein homolog |
27 % / 359 aa
|
| C. elegans: PID | PID:g3876596 - similarity with the transcripton factor involved in the expression of the human MHC class II gene |
38 % / 332 aa
|
| S. cerevisiae | PID:g2340986 - Ylr176cp |
46 % / 70 aa
|
| E. coli | PID:g1787117 - cell division protein |
34 % / 149 aa
|
原網頁