DNA MISMATCH REPAIR (PDBFINDER:1B62_A)
- and -
DNA REPAIR (PDBFINDER:1BKN_B)
Query: >PDBFINDER:1B62_A
Length
= 331
Reference: Query=
(331 letters)
>PDBFINDER:1BKN_B
Length = 271
Score = 504 bits
(1298), Expect = e-148
Identities = 271/311 (87%), Positives = 271/311 (87%), Gaps =
40/311 (12%)
Query: 20 VERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSK
79
VERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALA
Sbjct: 1
VERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALA------ 54
Query: 80 IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAH
139
EAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAY MNVTVKPAAH
Sbjct: 55 -------EAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAY-----MNVTVKPAAH
102
Query: 140
PVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQY 199
PVGTTLEVLDL
LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQY
Sbjct: 103
PVGTTLEVLDL----------LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQY 152
Query: 200
RAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVN 259
RAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVN
Sbjct: 153
RAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVN 212
Query: 260
GRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPKHEVRFHQSRLVHD 319
GRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQV
HQSRLVHD
Sbjct: 213
GRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQV------------HQSRLVHD 260
Query: 320 FIYQGVLSVLQ 330
FIYQGVLSVLQ
Sbjct: 261 FIYQGVLSVLQ 271
Lambda K H
0.321 0.136 0.395
Gapped
Lambda K H
0.267
0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657
Number of Sequences: 0
Number of extensions: 19
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without
gapping: 1
Number of HSP's successfully gapped in
prelim test: 0
Number of HSP's that attempted gapping in prelim
test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 271
length of database: 331
effective HSP length: 27
effective length of query: 244
effective length of database: 304
effective search space: 74176
effective search space used: 74176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 22 (13.1 bits)
S2: 22 (13.1 bits)