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Search Results ( 14 matches)

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MatInspector Release professional 5.2 Nov. 2001 Thu Dec 6 19:06:40 2001

Solution parameters:

Sequence file: Huang1.seq (2 seq.)
Family matches: yes
MatInspector library: Matrix Family Library Version 2.2 September 2001
Selected groups
(core/matrix sim):
  • ALL insects.lib (0.90/0.90)
Sequence
representation:
  • Basepairs marked red show a high information content,i.e. the matrix exibits a high conservation (ci-value > 60) at this position.
  • Basepairs in capital letters denote the core sequence used by MatInspector.

Inspecting sequence EP23022 (1 - 166):

Name of family/matrix Further Information REOpt.PositionStrandCore sim. Matrix sim.Sequence
I$DDVL/DL.02 Dorsal, protein for dorso-ventral axis formation, homologous to vertebrate c-rel0.530.90 3 - 13 (-)1.0000.911tgatTTTCtaa
I$DHOM/DFD.01 Deformed, homeotic gene in drosophila development2.860.98 7 - 22 (-)1.0000.952attgtgTAATgatttt
I$DHOM/DFD.01 Deformed, homeotic gene in drosophila development2.860.98 37 - 52 (-)1.0000.975tgaaaaTAATcaattt
I$DCAD/CAD.01 Drosophila homeodomain protein caudal, vertebrate homolog cdx5.780.97 64 - 73 (+)1.0000.902gcgcTTTAca
I$DHUB/HB.02 Hunchback, early maternal and zygotic zinc finger gene, activated by bicoid0.450.98 68 - 80 (+)1.0000.953tttacAAAAAtct
I$DDVL/DL.02 Dorsal, protein for dorso-ventral axis formation, homologous to vertebrate c-rel0.530.90 81 - 91 (+)1.0000.920atatTTTCtca
I$DHOM/DFD.01 Deformed, homeotic gene in drosophila development2.860.98 130 - 145 (-)1.0000.943cgttcaTAATttccca

Map : 


        1     TATTAGAAAATCATTACACAATAGAAAATAGGTACAAAATTGATTATTTT

(       3)     -NGRGAAAANCN(I$DL.02(0.911))
(       7)         -NNNNNNATTAMYNNNN(I$DFD.01(0.952))
(      37)                                       -NNNNNNATTAMYNNNN(I$DFD.01(0.975))


(      64)                +NNTYTTTANR(I$CAD.01(0.902))
(      68)                    +NNNAYAAAAAWNN(I$HB.02(0.953))
(      81)                                 +NGNTTTTCYCN(I$DL.02(0.920))

       51     CATTCCATCATATGCGCTTTACAAAAATCTATATTTTCTCATAACATATT




      101     TTGAGCCATCTTTCCTGCAGTGCACCATCTGGGAAATTATGAACGAAGCG

(     130)                                -NNNNNNATTAMYNNNN(I$DFD.01(0.944))



      151     AGCAGAAGTCCAAAAG
7 matches found.

Inspecting sequence X12452 (1 - 166):

Name of family/matrix Further Information REOpt.PositionStrandCore sim. Matrix sim.Sequence
I$DELF/ELF1.01 Drosophila Elf-1 (NTF-1), vertebrate homolog CP2 (human, mouse)1.140.91 3 - 18 (-)1.0000.934tgtgatgGTTTtctaa
I$DDVL/DL.02 Dorsal, protein for dorso-ventral axis formation, homologous to vertebrate c-rel0.530.90 3 - 13 (-)1.0000.911tggtTTTCtaa
I$DHOM/DFD.01 Deformed, homeotic gene in drosophila development2.860.98 38 - 53 (+)1.0000.961aatagaTAATtttcat
I$DCAD/CAD.01 Drosophila homeodomain protein caudal, vertebrate homolog cdx5.780.97 64 - 73 (+)1.0000.902gcgcTTTAca
I$DHUB/HB.02 Hunchback, early maternal and zygotic zinc finger gene, activated by bicoid0.450.98 68 - 80 (+)1.0000.953tttacAAAAAtct
I$DDVL/DL.02 Dorsal, protein for dorso-ventral axis formation, homologous to vertebrate c-rel0.530.90 81 - 91 (+)1.0000.920atatTTTCtca
I$DHOM/DFD.01 Deformed, homeotic gene in drosophila development2.860.98 130 - 145 (-)1.0000.943cgttcaTAATttccca

Map : 


(      38)                                        +NNNNRKTAATNNNNNN(I$DFD.01(0.962))

        1     TATTAGAAAACCATCACACAATAGAAAATAGGTACAAAATAGATAATTTT

(       3)     -NTWCAAAACCRNWMNN(I$ELF1.01(0.935))
(       3)     -NGRGAAAANCN(I$DL.02(0.911))


(      64)                +NNTYTTTANR(I$CAD.01(0.902))
(      68)                    +NNNAYAAAAAWNN(I$HB.02(0.953))
(      81)                                 +NGNTTTTCYCN(I$DL.02(0.920))

       51     CATTCCATCATATGCGCTTTACAAAAATCTATATTTTCTCATAACATATT




      101     TTGAGCCATCTTTCCTGCAGTGCACCATCTGGGAAATTATGAACGAAGCG

(     130)                                -NNNNNNATTAMYNNNN(I$DFD.01(0.944))



      151     AGCAGAAGTCCAAAAG
7 matches found.

A total of 14 matches were found in 2 sequences!

Sequences searched: 2 (332 bp).

Reference for MatInspector:
Quandt, K. Frech, K. Karas, H. Wingender, E. and Werner, T.
MatInd and MatInspector - New fast and versatile tools for detection of consensus matches in nucleotide sequence data
Nucleic Acids Research 23, 4878-4884 (1995)
Analyze a new sequence via the MatInspector input form
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