CD: | pfam01119, CD-Search result with query-sequence added |
| Description: | DNA_mis_repair, DNA mismatch repair protein. Also known as the mutL/hexB/PMS1 family. |
| Source: | Pfam[US], Pfam[UK] |
This CD alignment includes 3D structure. To display structure, download Cn3D v3.0!
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
consensus 1 GTTVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLQRYALIHPNVSFSLTKEGKALLQLKT 60
query 147 GTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRT 206
1B63_A 144 GTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRA 203
gi 730028 147 GTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRT 206
gi 3192877 149 GTIICIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAVHNPRVGFTLRKQGDAQPALRT 208
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70 80 90 100 110 120
....*....|....*....|....*....|....*....|....*....|....*....|
consensus 61 SP--S-SLKERIRSVFGTAVLKNLIPF--E--EKDGDFRIEGFISSPNVSR-SSRDRQFL 112
query 207 LP--NaSTVDNIRSIFGNAVSRELIEIgcE--DKTLAFKMNGYISNANYSV--KKCIFLL 260
1B63_A 204 VPegG-QKERRLGAICGTAFLEQALAI--E--WQHGDLTLRGWVADPNHTTpALAEIQYC 258
gi 730028 207 LPn-A-STVDNIRSIFGNAVSRELIEI--GceDKTLAFKMNGYISNANYSV--KKCIFLL 260
gi 3192877 209 PVa-S-SRSENIRIIYGAAISKELLEF--ShrDEVYKFEAECLITQVNYSA--KKCQMLL 262
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130 140 150 160 170 180
....*....|....*....|....*....|....*....|....*....|....*....|
consensus 113 FINGRPVEDKLLLKAIREVYATYLPRGRYPVFVLNLELPPELVDVNVHPDKKEVRLLKEE 172
query 261 FINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEE 320
1B63_A 259 YVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSR 318
gi 730028 261 FINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEE 320
gi 3192877 263 FINQRLVESTALRTSVDSIYATYLPRGHHPFVYMSLTLPPQNLDVNVHPTKHEVHFLYQE 322
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....*..
consensus 173 EILDLIK 179
query 321 SILERVQ 327
1B63_A 319 LVHDFIY 325
gi 730028 321 SILERVQ 327
gi 3192877 323 EIVDSIK 329
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