Version 3.2
Protein Tools
assignment-6-MLH1
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Ndjinn - Multiple Database Search
Retrieve BATCH Output
Add New Protein Sequence
Edit Protein Sequence(s)
Delete Protein Sequence(s)
Copy Protein Sequence(s)
View Protein Sequence(s)
Download Protein Sequence(s)
View Database Records of Imported Sequences
View Available Scoring Matrices
BL2SEQ - Compare proteins to each other with BLAST
BL2SEQX - Compare a protein to nucleotide sequences with BLAST
BLASTP - Compare a PS to a PS DB
TBLASTN - Compare a PS to a translated DB
PSIBLAST - Position Specific Iterative BLAST
FASTA - Heuristic Sequence Similarity Search (PS Or DB)
TFASTA - Compare a PS to a NS->PS DB
TFASTX - Comp PS to Trans DNA (NS Or DB)
TFASTY - Comp PS to Trans DNA (NS Or DB)
SSEARCH - Smith-Waterman Local Alignment of Proteins
CLUSTALW - Multiple Sequence Alignment
CLUSTALWPROF - Align Sequences to Existing Alignment (Profile)
ALIGN - Optimal Global Alignment of Two PS
MSA - Multiple Sequence Alignment (Sum-of-Pairs Criterion)
LALIGN - Calculate N-Best Local PS Alignments
LFASTA - Local Alignment of Two PS
ROBUST - Global alignment of Two PS (Show Robust Pairs)
SIM - N-Best Local Similarities Using Affine Weights
BESTSCOR - Calculate the Best Self-Comparison Score
CTREE - Align protein sequences with confidence estimates
PRSS - Compare a PS to a Shuffled PS
SAPS - Statistical Analysis of PS
AASTATS - Statistics Based on Amino Acid Abundance
GREASE - Kyte-Doolittle Hydropathy Profile
RPSBLAST - Compare a PS to a Conserved Domain DB
FingerPRINTScan - PRINTS fingerprint identification
PROSEARCH - Search Prosite DB for Patterns in a PS
PPSEARCH - Search Prosite DB for Patterns in a PS
PFSCAN - Sequence Search Against a Set of Profiles (PROSITE and PFAM)
HMMPFAM - Search against Pfam HMM database
BLIMPS - Sequence Search Against a Set of Profiles (BLOCKS)
PATTERNMATCHDB - Search for Regular Expressions in a protein sequence DB
PATTERNMATCH - Search for Regular Expressions in a protein sequence
GOR4 - Predict Secondary Structure of PS
RANDSEQ - Randomize a Sequence
CHOFAS - Predict Secondary Stucture of PS(s) (Chou-Fasman)
HTH - Predict HTH Motifs in Protein Chains
PELE - Protein Structure Prediction
DSSP - Secondary Structure/Solvent Exposure of PDB Proteins
TMAP - Prediction of Transmembrane Segments
TMHMM - Predict location of transmembrane helices and location of intervening loop regions
SWISSPROT:MLH1_HUMAN
DNA MISMATCH REPAIR PROTEIN MLH1 (MUTL PROTEIN HOMOLOG 1) [Homo sapiens (Human)]
Copyright (C) 1999, Board of Trustees of the University of Illinois.