Parameter Table

keyword	variable name	allowed values	default
chemical_matching	cmatch	yes no	no
case_sensitive	casen	yes no	yes
match		ligand_color receptor_color	none

Parameter Descriptions

chemical_matching

turns on the chemical matching functionality. How this works is more fully described in the Chemical Matching section in this document.

case_sensitive

determines whether color names will be case sensitive (i.e. whether labels such as neutral and NEUTRAL are the same color).

match

specifies the rules for matching ligand colors which receptor colors. Its format is match ligand_color receptor_color. It can be repeated for each desired ligand/receptor color combination.